Gene TM1040_2326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2326 
Symbol 
ID4078316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2446388 
End bp2446870 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content58% 
IMG OID638007648 
Productbeta-Ig-H3/fasciclin 
Protein accessionYP_614320 
Protein GI99082166 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2335] Secreted and surface protein containing fasciclin-like repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGTA AGTTTGCACT CAGCACCATC GCCAGCCTTG CCGTTGCCAC CGCCGCTTTT 
GCGGACGGTC ATTCCAAAGA CATCGTCGAC ATTGCCTCGG GCAACGACAA CTTCGACACG
TTGGTCGCGG CTGTGTCTGC TGCTGATCTG GTGGACACGC TCAAGAGCGA AGGCCCTTTC
ACCGTCTTTG CCCCGACCGA CGCAGCATTT GAAGCACTGC CCGAAGGCAC GGTTGAGACT
CTCCTGAAGC CCGAAAACAA GGATCAGCTG ATCGCGATCC TCACCTACCA CGTTGTGCCG
GGCAAGGTGA TGTCCTCCGA CCTGACCGAC GGTATGAAGG CGGCCACCGT GCAGGGCTCT
GAAATCACCA TCGATCTCGA CAATGGCGCG ATGGTCGATG AGGCCTCCGT GGTGCAGGCA
GACATCGAGG CCGAGAACGG CGTGATCCAT GTGATCGACA AAGTGATCAT GCCAGGCAGC
TAA
 
Protein sequence
MIRKFALSTI ASLAVATAAF ADGHSKDIVD IASGNDNFDT LVAAVSAADL VDTLKSEGPF 
TVFAPTDAAF EALPEGTVET LLKPENKDQL IAILTYHVVP GKVMSSDLTD GMKAATVQGS
EITIDLDNGA MVDEASVVQA DIEAENGVIH VIDKVIMPGS