Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2326 |
Symbol | |
ID | 4078316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2446388 |
End bp | 2446870 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638007648 |
Product | beta-Ig-H3/fasciclin |
Protein accession | YP_614320 |
Protein GI | 99082166 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2335] Secreted and surface protein containing fasciclin-like repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGTA AGTTTGCACT CAGCACCATC GCCAGCCTTG CCGTTGCCAC CGCCGCTTTT GCGGACGGTC ATTCCAAAGA CATCGTCGAC ATTGCCTCGG GCAACGACAA CTTCGACACG TTGGTCGCGG CTGTGTCTGC TGCTGATCTG GTGGACACGC TCAAGAGCGA AGGCCCTTTC ACCGTCTTTG CCCCGACCGA CGCAGCATTT GAAGCACTGC CCGAAGGCAC GGTTGAGACT CTCCTGAAGC CCGAAAACAA GGATCAGCTG ATCGCGATCC TCACCTACCA CGTTGTGCCG GGCAAGGTGA TGTCCTCCGA CCTGACCGAC GGTATGAAGG CGGCCACCGT GCAGGGCTCT GAAATCACCA TCGATCTCGA CAATGGCGCG ATGGTCGATG AGGCCTCCGT GGTGCAGGCA GACATCGAGG CCGAGAACGG CGTGATCCAT GTGATCGACA AAGTGATCAT GCCAGGCAGC TAA
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Protein sequence | MIRKFALSTI ASLAVATAAF ADGHSKDIVD IASGNDNFDT LVAAVSAADL VDTLKSEGPF TVFAPTDAAF EALPEGTVET LLKPENKDQL IAILTYHVVP GKVMSSDLTD GMKAATVQGS EITIDLDNGA MVDEASVVQA DIEAENGVIH VIDKVIMPGS
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