Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2291 |
Symbol | |
ID | 4078475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2409675 |
End bp | 2411333 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638007613 |
Product | cytochrome-c oxidase |
Protein accession | YP_614285 |
Protein GI | 99082131 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.40554 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGACG CAGCCATTCA AGGTCACGGC CACGAAGACG AGCGGAGCTT TTTCACCCGC TGGTTTATGA GCACGAACCA CAAGGATATC GGTATCCTTT ACCTGATCGT TTCGGCGCTC ACCGGCTTCA TTTCCGTCGC ATTCACCGTC TACATGCGAC TCGAACTTAT GGATCCCGGT GTGCAGTACA TGTGTCTGGA AGGCTTTGCC GCAGACCCCT GTACGCCGAA TGGCCATCTC TGGAACGTGC TGATTACAGG CCACGGCGTC TTGATGATGT TCTTCGTCGT CATCCCGGCC CTGTTCGGCG GGTTTGGCAA CTATTTCATG CCGCTGCAGA TCGGCGCGCC GGATATGGCG TTCCCGCGGA TGAACAACCT CAGCTTCTGG ATGTATGTTG CAGGCACCGC GCTGGCGGTC TCCTCGGTCT ATGCGCCGGG CGGCAACAAC CAGCTGGGCG CTGGCGTGGG TTGGGTTCTC TATCCGCCGC TCTCCGTCAA GGAAGGCGGG ATCGCGATGG ATCTGGCGAT TTTCGCCGTG CACGTCTCCG GTGCCTCCTC GATCCTGGGC GCGATCAACA TGATCACCAC CTTCCTGAAC ATGCGTGCCC CCGGCATGAC CCTGTTCAAG GTGCCGCTCT TCAGCTGGTC GATCTTCGTC ACCTCCTGGC TGATCCTTCT GTCCCTGCCG GTTCTGGCAG GCGCAATCAC CATGCTGCTG ATGGATCGTA ACTTCGGCTT CACCTTCTTT GATGCCGCAG GCGGCGGGGA CCCGGTTCTC TACCAGCACA TCCTGTGGTT CTTCGGCCAC CCCGAAGTGT ACATCGTGAT CCTGCCGGGC TTTGGCATCA TCTCCCACGT GATCGCGACC TTCTCGCGCA AGCCTGTGTT TGGCTACCTG CCGATGGTCT GGGCGATCAT CGCGATTGGT GTTCTGGGCT TCGTCGTTTG GGCGCACCAC ATGTACACCG TCGGCATGAG CCTCAACCAG CAGGCCTACT TCATGCTGGC CACCATGGTG ATCGCCGTGC CCACAGGGGT GAAGGTCTTC TCGTGGATCG CAACCATGTG GGGCGGCTCC ATCGAGTTCA AAGCCCCCAT GGTCTTTGCT TTCGGCTTCC TGTTCCTGTT CACCGTTGGC GGTGTGACCG GCGTGGTGCT GTCGCAGGCG GCCGTGGACC GGGCCTATCA TGACACCTAT TACGTGGTGG CACACTTCCA CTACGTGATG AGCCTTGGTG CGGTGTTTGC GATCTTCTCC GGCATCTACT TCTACTTTGG TAAGATGACC GGCCGTCAGT ACTCCGAACT GGGCGCACAG ATTCACTTCT GGATGTTCTT CATCGGTGCA AACCTGACGT TCTTCCCGCA GCACTTCCTG GGCCGTCAGG GCATGCCGCG TCGCTACATC GACTATCCCG AAGGCTTTGC ATACTGGAAC AAGATCTCGT CCTATGGCGC GTTCCTGTCC TTTGCCTCCT TCATCTTCTT CTTCGGTGTG GTGATCTATT CACTGCTGCG TGGCGCGCGT GTGACCCAGA ACAACTACTG GAACGAATAC GCCGACACGC TGGAGTGGAC CCTGCCCTCT CCGCCGCCGG AGCACACCTT TGAAATCCTG CCCAAGCAGG AAGACTGGGA CAAAAGCCAC AGCCACTAA
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Protein sequence | MADAAIQGHG HEDERSFFTR WFMSTNHKDI GILYLIVSAL TGFISVAFTV YMRLELMDPG VQYMCLEGFA ADPCTPNGHL WNVLITGHGV LMMFFVVIPA LFGGFGNYFM PLQIGAPDMA FPRMNNLSFW MYVAGTALAV SSVYAPGGNN QLGAGVGWVL YPPLSVKEGG IAMDLAIFAV HVSGASSILG AINMITTFLN MRAPGMTLFK VPLFSWSIFV TSWLILLSLP VLAGAITMLL MDRNFGFTFF DAAGGGDPVL YQHILWFFGH PEVYIVILPG FGIISHVIAT FSRKPVFGYL PMVWAIIAIG VLGFVVWAHH MYTVGMSLNQ QAYFMLATMV IAVPTGVKVF SWIATMWGGS IEFKAPMVFA FGFLFLFTVG GVTGVVLSQA AVDRAYHDTY YVVAHFHYVM SLGAVFAIFS GIYFYFGKMT GRQYSELGAQ IHFWMFFIGA NLTFFPQHFL GRQGMPRRYI DYPEGFAYWN KISSYGAFLS FASFIFFFGV VIYSLLRGAR VTQNNYWNEY ADTLEWTLPS PPPEHTFEIL PKQEDWDKSH SH
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