| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2272 |
|---|
| Symbol | |
|---|
| ID | 4078456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2387829 |
|---|
| End bp | 2388293 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007594 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_614266 |
|---|
| Protein GI | 99082112 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.257031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.323507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCA CCAAAAGAAC CAACATCGCG GTCCGACTGT TGATGTATTG TGCTCTCAAT
GAGGGACGCC TTGTCACCAA ATCCGAAATC GCGGCGCGTT GCAATATCTC GGAAAACCAC
TTGGCGCAGG TGGTGAACCA ATTGAGCCAG CTTGGCTTTC TCAAGACCCA GCGCGGACGC
AATGGCGGAC TGGCGCTCGG TCGCGCCGCT GCCGACATCT GCATTGGCGA TGTCTTTCGT
CAGGTCGAAG GTGGGCTGCC GATGGTGGAG TGTTTTGCCG ATGTGGACAA CACCTGCCCC
CTGGTGGAGG CCTGCCGTCT GCGCGACGCG CTCACCCGGG CGGGGGAGGC GTTTTATGGC
GCGCTCGACG GGATCTCGCT CGAGAGTCTG ACCTGCGACA ACATTGATCT ACAGCGCATC
CTGTCGCCGC TCTCCTGCCC CAGCCCGGCG AAAACGCCCG CCTGA
|
|---|
| Protein sequence | MRITKRTNIA VRLLMYCALN EGRLVTKSEI AARCNISENH LAQVVNQLSQ LGFLKTQRGR
NGGLALGRAA ADICIGDVFR QVEGGLPMVE CFADVDNTCP LVEACRLRDA LTRAGEAFYG
ALDGISLESL TCDNIDLQRI LSPLSCPSPA KTPA
|
|---|
| |