| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2259 |
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| Symbol | |
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| ID | 4077326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2373550 |
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| End bp | 2375034 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638007581 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_614253 |
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| Protein GI | 99082099 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCAC GTCGTCACTT TCTCAGCACC GCCCTCGCGG GGCTTGCCGC GGCCCCCGCG
CTGGCCAATG CCCCCGGCTA CACCCCTCGC CCCAAGGCCC GCGGGCTCAG CCCCTATACC
CCCGGCGCAG ATGGTCTCGA CGCGATCCTG CGTGGCGCGG GGCTCTCAGG GCAGAGCACC
TGCGTAGTCG CCAACGCGCG CACCGGTCAG GTCCTCGAAA GTGTGGAGGG CGACGCGCTT
TTACCCCCTG CCAGCGTGGC AAAAGTTCTC ACGGCGCTTT ACGCGCTCGA CTCGCTTGGT
GCTGGCTACC GGTTTCGAAC CCGCCTGGTG GCCACTGGCC CGCTCAAGAA CGGGATCATT
CAGGGCGATC TTGTGCTGGT TGGCGGCGCC GATCCAACGC TCGACACGGA TGGGCTTGCC
AATCTCGCCG GCCAAATGAA GACGGCGGGC GTGCGGGGCG TCACTGGCCG CCTGCTGATC
TGGGAGGATA TGCTTCCCTA TATCCGGTCG ATCGACCCGG ACCAGCCCGA TCATATCGGC
TACAGCCCTT CTGTGAGTGG CATCGCGCTG AACTTCAACC GGGTTCATTT TGAATGGAAG
CGCGCGGGCA ACAACTGGGC CATCACGATG GATGCCCGCA CACAAAAGTA CCGCCCCGAC
GTCTATACCT CGAAAATGGC CGTCGCGCGG CGCGATCTGC CAGTCTACAG CTATGAGAAC
AAGGCGGGCA TCGATCATTG GACCGTCGCC AGCGGCGCCC TCGGCAATGG GGGCGCGCGG
TGGTTGCCGG TGCGCAATCC CGCGCTCTAT GCCGGGGATG TGTTCCAGAC CCTCGCTCGT
GCCAACGGGA TCGCCTTGCC GAGCCCAAAG ACCACCGCGA CCCTGCCCGG CGGCACCGTG
GTCGCCCAGA TCCAGAGCGC GCCGCTGCCG GACCTGCTGC GCGCCATGCT CAAATACTCC
AACAACCTGA TGGCCGAAAT GATCGGCATG ACGGCCTCCC TGCAGCGCGG CGCCCGCCCC
TCAAGCCTCA AGTCCTCGGG GCAGAGAATG AGCGACTGGG CGCGCAGCGC CCTCGGCATG
CAGCACTGCA AGATGGTGGA CCACTCGGGC CTTGGCGAAG AATCCCGTCT CAGCGCCAAT
GACATGGTGC GCGCGCTGCT TGCGTCACGC CGCACCGGTG CGCTGAAACC ACTGCTCAAG
CCCTACTATT TCAACGATGC CAAGGGCCGC CCGATCAAAA CCCACCCTGT GAAGATCGCG
GCCAAAACCG GCACGCTCAA TTTTGTCTCG GGGCTTGGCG GATTTATCAA CACGCCCGAT
GGCGGCGAGC TTGTCTTTGC AATCTTCAGC GCCGACCAGC GCGCCCGCGC CAAGATCAGC
CGTGCCGAAC GTGAACGCCC GCGCGGAGGG CGCAGCTGGA ACACACGCGC AAAGAAGCTA
CAGCAAAACC TGCTGGACCG GTGGGGACAG GTCTACGGCT CCTGA
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| Protein sequence | MISRRHFLST ALAGLAAAPA LANAPGYTPR PKARGLSPYT PGADGLDAIL RGAGLSGQST
CVVANARTGQ VLESVEGDAL LPPASVAKVL TALYALDSLG AGYRFRTRLV ATGPLKNGII
QGDLVLVGGA DPTLDTDGLA NLAGQMKTAG VRGVTGRLLI WEDMLPYIRS IDPDQPDHIG
YSPSVSGIAL NFNRVHFEWK RAGNNWAITM DARTQKYRPD VYTSKMAVAR RDLPVYSYEN
KAGIDHWTVA SGALGNGGAR WLPVRNPALY AGDVFQTLAR ANGIALPSPK TTATLPGGTV
VAQIQSAPLP DLLRAMLKYS NNLMAEMIGM TASLQRGARP SSLKSSGQRM SDWARSALGM
QHCKMVDHSG LGEESRLSAN DMVRALLASR RTGALKPLLK PYYFNDAKGR PIKTHPVKIA
AKTGTLNFVS GLGGFINTPD GGELVFAIFS ADQRARAKIS RAERERPRGG RSWNTRAKKL
QQNLLDRWGQ VYGS
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