| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2253 |
|---|
| Symbol | |
|---|
| ID | 4077320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2368700 |
|---|
| End bp | 2369335 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638007575 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_614247 |
|---|
| Protein GI | 99082093 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4136] ABC-type uncharacterized transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.663357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGG GCCTGAGCCT GCGTGCCCTG CGCATCCTGC GGGGCGACCA TCCCCTGTTG
GAACTCGACC TCACCGTGCC CCCCGCCACC ATCCTGAGCG TGATGGGGCC CTCGGGTGTT
GGAAAATCCA CCCTGCTTGC GGCCATCACC GGACAGATGA GCACGGATTT CAGCCTTGAG
GGCGGGATCT TCCTCAATGG CCGCGACCTC TGCCCCCTGC CCCCGCAGGC GCGCCGTGTC
GGCATCCTGT TCCAAGACCA TTTGTTGTTT CCGCACCTGA GCGTTGGGGC CAACCTCGCC
TTTGGCCTTG CACCCCATAT CCGAGGCCGC ACCCGTCGCG CGCGCATCAA AGACGCGCTG
GCAGAAATCG GCCTAGAGGG CTTTCACGAC CGCGACCCGG AGACGCTCTC GGGCGGTCAA
AAAGCCCGCG TGGCCCTGAT GCGCATGCTG CTCTCCGAGC CGGATCTCTT GTTGCTGGAC
GAGCCGTTTT CCCGGCTGGA CGCCACCCTG CGCAGCCAGA TGCGCGATCT GGTGTACACC
TTCGCCCGCG ACCGCGCGCT GCCGGTGCTG ATGGTGACAC ATGATGCCGC AGACGCCGAG
GCCGCAGGGG GGCCGATTGT TCAGTTGGAG CCATGA
|
|---|
| Protein sequence | MAEGLSLRAL RILRGDHPLL ELDLTVPPAT ILSVMGPSGV GKSTLLAAIT GQMSTDFSLE
GGIFLNGRDL CPLPPQARRV GILFQDHLLF PHLSVGANLA FGLAPHIRGR TRRARIKDAL
AEIGLEGFHD RDPETLSGGQ KARVALMRML LSEPDLLLLD EPFSRLDATL RSQMRDLVYT
FARDRALPVL MVTHDAADAE AAGGPIVQLE P
|
|---|
| |