Gene TM1040_2247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2247 
Symbol 
ID4077314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2361048 
End bp2361980 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content64% 
IMG OID638007569 
ProductLysR family transcriptional regulator 
Protein accessionYP_614241 
Protein GI99082087 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.711859 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGCA TTCAAAGCAT GCAGGTGTTT GTCGCCGTCG CCGAAGAAGA GGGCTTTGCC 
GCGGGCGCGC GCCGGATGGG GCTGAGCGCG CCATCGGCCA CGCGGGCGAT CAACGGGCTT
GAGACACAGC TAGGCGCGCG ACTCTTTACA CGTACCACCC GGCGGCTGCA TCTGACGGAC
GTGGGGCAGC GCTACCTTGA GGACGTGCGC CATATCCTGA CCTCATTGCA GGCGGCAGAC
GATACAGCGC GCGGCGCGGC CAGCGCGCCG GTGGGTCTGT TACGTCTCAC CTGCCCCAAT
GAATTCGGTC GCATCTACAT CCTGCCGATC CTGCTGGATT ATCTCGATCA TTATCCCGAC
ATGCGCGCAG AATTGGTCCT GTTGGACCGG GTGGTGAACA TCGTCGAAGA AGGCTTCGAC
GTGGCCCTGC GCATCGGCCA TCTGCCCTCC TCGACGCTCT CGGCGGTAAA GGTCGGAGCG
GTGCGCCGGG TGCTCTGCGC GGCTCCCGCT TATCTGGAGC GGTACGGCAC ACCAGAAACT
CCGGCGGATC TGAGCGCGCA TCGCATCGTG GCTGTCAATG TGATCTCTTC TGCGACCGAA
TGGCGGTTCG GCGCCCAACA AGAGATCGCC GTGCGCATCG CGCCGCAACT CTGTGTGAGC
ACCGTTGCAG CCGGGCGTGA CGCGGCGCGC GAAGGCTGGG GGCTGTGCCG GATGCTCTCG
TATCAGGCCG GACGCGATGT CGCGGAGGGG CACCTGACCT GCCTGCTCGA AGACTATGAG
CCAGAAAGCA TGCCGATTCA TCTGGTTCAC ACCGAAGGAC GGCGCGCCCC AGCCAAGGTG
CGCAGCTTTA TCGATTTTGC CCGCGACCGG CTGCGCGCGG ACCCGGTGCT TCAGGCCTTG
TCATCCAGCA AGGGCTGTGG GCTGAGCGCT TAG
 
Protein sequence
MDRIQSMQVF VAVAEEEGFA AGARRMGLSA PSATRAINGL ETQLGARLFT RTTRRLHLTD 
VGQRYLEDVR HILTSLQAAD DTARGAASAP VGLLRLTCPN EFGRIYILPI LLDYLDHYPD
MRAELVLLDR VVNIVEEGFD VALRIGHLPS STLSAVKVGA VRRVLCAAPA YLERYGTPET
PADLSAHRIV AVNVISSATE WRFGAQQEIA VRIAPQLCVS TVAAGRDAAR EGWGLCRMLS
YQAGRDVAEG HLTCLLEDYE PESMPIHLVH TEGRRAPAKV RSFIDFARDR LRADPVLQAL
SSSKGCGLSA