Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2247 |
Symbol | |
ID | 4077314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2361048 |
End bp | 2361980 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638007569 |
Product | LysR family transcriptional regulator |
Protein accession | YP_614241 |
Protein GI | 99082087 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.711859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCGCA TTCAAAGCAT GCAGGTGTTT GTCGCCGTCG CCGAAGAAGA GGGCTTTGCC GCGGGCGCGC GCCGGATGGG GCTGAGCGCG CCATCGGCCA CGCGGGCGAT CAACGGGCTT GAGACACAGC TAGGCGCGCG ACTCTTTACA CGTACCACCC GGCGGCTGCA TCTGACGGAC GTGGGGCAGC GCTACCTTGA GGACGTGCGC CATATCCTGA CCTCATTGCA GGCGGCAGAC GATACAGCGC GCGGCGCGGC CAGCGCGCCG GTGGGTCTGT TACGTCTCAC CTGCCCCAAT GAATTCGGTC GCATCTACAT CCTGCCGATC CTGCTGGATT ATCTCGATCA TTATCCCGAC ATGCGCGCAG AATTGGTCCT GTTGGACCGG GTGGTGAACA TCGTCGAAGA AGGCTTCGAC GTGGCCCTGC GCATCGGCCA TCTGCCCTCC TCGACGCTCT CGGCGGTAAA GGTCGGAGCG GTGCGCCGGG TGCTCTGCGC GGCTCCCGCT TATCTGGAGC GGTACGGCAC ACCAGAAACT CCGGCGGATC TGAGCGCGCA TCGCATCGTG GCTGTCAATG TGATCTCTTC TGCGACCGAA TGGCGGTTCG GCGCCCAACA AGAGATCGCC GTGCGCATCG CGCCGCAACT CTGTGTGAGC ACCGTTGCAG CCGGGCGTGA CGCGGCGCGC GAAGGCTGGG GGCTGTGCCG GATGCTCTCG TATCAGGCCG GACGCGATGT CGCGGAGGGG CACCTGACCT GCCTGCTCGA AGACTATGAG CCAGAAAGCA TGCCGATTCA TCTGGTTCAC ACCGAAGGAC GGCGCGCCCC AGCCAAGGTG CGCAGCTTTA TCGATTTTGC CCGCGACCGG CTGCGCGCGG ACCCGGTGCT TCAGGCCTTG TCATCCAGCA AGGGCTGTGG GCTGAGCGCT TAG
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Protein sequence | MDRIQSMQVF VAVAEEEGFA AGARRMGLSA PSATRAINGL ETQLGARLFT RTTRRLHLTD VGQRYLEDVR HILTSLQAAD DTARGAASAP VGLLRLTCPN EFGRIYILPI LLDYLDHYPD MRAELVLLDR VVNIVEEGFD VALRIGHLPS STLSAVKVGA VRRVLCAAPA YLERYGTPET PADLSAHRIV AVNVISSATE WRFGAQQEIA VRIAPQLCVS TVAAGRDAAR EGWGLCRMLS YQAGRDVAEG HLTCLLEDYE PESMPIHLVH TEGRRAPAKV RSFIDFARDR LRADPVLQAL SSSKGCGLSA
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