| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2229 |
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| Symbol | |
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| ID | 4077296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2342347 |
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| End bp | 2344095 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007551 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_614223 |
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| Protein GI | 99082069 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAGG CGCGTCAGTT GAACCGGATG TCGCAGCGCG TGACGGCCGC GATGGAGGCC
TCCAAAGATG GCTTTGCGAT CTTCGACGAA GAAAACCGTC TCGTGACCTG CAACGATCGT
TATCGAGAAT TGAGCCATGT TCACCCCGAC AAAGTTGTGC CCGGCATGAC CCTCACGGAG
ATCCTCGCTG ACGCGGTAGA ATCCGGGCAC TATTTGCTGC GTGGGGTTTC GGCCAAGGAT
TACATCCAGA ATTACAACCA ACGCATCGTC AACCATGGCT TTTGTACAGA AACCCAGCTG
GAACTGGCTG GCGATCGCCA TATCGTGTCA CGGGTGAATG AAACCGATTT TGGCGACAAG
GTGGTGACAC GCATCTGCAT TACAGATCTG GTGCGGAATG AACGGGAACA GCGCCGCGCC
GCGCAGGCGC TCAGAGAGAC GAAAGACCGG TTGGAGTTGC AATCCCTCAG CGATCCACTG
ACGCATTTGC CCAACCGGCG ACACCTGGAT CGCGAGCTGA GCCGAAGATT GCAGACAGAA
CCCGTTGCTC TGGTGCGGAT CGACCTGGAC CGGTTCAAGA AAATCAACGA CATCCTCGGC
CACGAGGCCG GGGACTATGT GCTTTGCCAC GTGGCGGATG TGCTTCGGGC GCACACGAAG
GCGGGGGATG TTCCCGCGCG GGTGGGAGGC GACGAATTTG TCGTTCTCTG TCGATCCGGG
ACAACGCTCG AGCAGGCGCA AACCCTGGCG ACTCGGGTGC TTCGGGCGGT GCTAGAGCCT
GTGGTCTGGG GCAACAAGCG CTGCAATTTC GGGGCAAGCT TTGGGGTCGC GCATGGCGTT
CCCGGTGAAA TCACGGCCAG CGAGTTGCTG AGCAATGCGG ATGCGGCGCT CTACCGGGCG
AAGGCTTCGG GGCGCGGCGC GGTAGAAGTT TTCACATCCG AGATGCGGGC AGAGGTACTG
GAAGAGCGCG CGCTCTCGGA CCGACTGCCC TATGCGATCG AGGCAGGCGA AATAACGCCC
TATTATCACA CGCAGCATGA TGCTCTGACC TGGCATCTAG CCGGGGTTGA GGTGCTGGCG
CGCTGGGAGC ATCCCGACCG CGGTGTACTG CCCCCCGACA GGTTTCTGGG CATTGCCAAG
CAGCTTGGGC TTGAGGCGGA GTTGGATGGC TGCATCTTTG ACAGGGCGGT GGCGGATATG
CGCAGCCTGC GCGCCGAGGG CATTCTGGTG CGGCGGGTGG CATTCAACGT AAGCGCGGCG
CGCATCATGC AGCCGAGCTT TATCGAAACG GTCCGCGCAC GCATCCCCGA TCAGCGCGAG
AGTTACGCGT TTGAAATTCT GGAATCGATC TCCTGCGAGG ATGAGGGCGA GGCGCTGATC
TTCTGCATCG ATGCGCTGAA GGATCTTGGT TTTCAGATTG ATGTCGACGA TTTCGGATCC
GGCCATGCGT CGATCAATGG CGTCCTCAAC ATCGAGCCGG ACGCCCTGAA AATCGACAGA
AATATCATCT TCCCGCTTGG AAAAAGCGAG CGCGCGGAAC GAATGGTGGC GTCAGTTGTG
GACCTTGCAC ACACTTTGGA TGTGAAGATC ATCGCCGAGG GGGTGGATAC CATTGAAAAA
GCAAAAACAC TCGGCGCCAT CGGTTGCGAT ATATTACAGG GGTTTTATTT CTCCAAACCA
CGTAGCTTTG CAGAATTGAA AAAGAACCTC GAAAGGTTGG ATCTCGGCGA TCAGGTGTCC
AACCTGTGA
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| Protein sequence | MEQARQLNRM SQRVTAAMEA SKDGFAIFDE ENRLVTCNDR YRELSHVHPD KVVPGMTLTE
ILADAVESGH YLLRGVSAKD YIQNYNQRIV NHGFCTETQL ELAGDRHIVS RVNETDFGDK
VVTRICITDL VRNEREQRRA AQALRETKDR LELQSLSDPL THLPNRRHLD RELSRRLQTE
PVALVRIDLD RFKKINDILG HEAGDYVLCH VADVLRAHTK AGDVPARVGG DEFVVLCRSG
TTLEQAQTLA TRVLRAVLEP VVWGNKRCNF GASFGVAHGV PGEITASELL SNADAALYRA
KASGRGAVEV FTSEMRAEVL EERALSDRLP YAIEAGEITP YYHTQHDALT WHLAGVEVLA
RWEHPDRGVL PPDRFLGIAK QLGLEAELDG CIFDRAVADM RSLRAEGILV RRVAFNVSAA
RIMQPSFIET VRARIPDQRE SYAFEILESI SCEDEGEALI FCIDALKDLG FQIDVDDFGS
GHASINGVLN IEPDALKIDR NIIFPLGKSE RAERMVASVV DLAHTLDVKI IAEGVDTIEK
AKTLGAIGCD ILQGFYFSKP RSFAELKKNL ERLDLGDQVS NL
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