Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2192 |
Symbol | |
ID | 4078183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2302522 |
End bp | 2303400 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638007514 |
Product | LysR family transcriptional regulator |
Protein accession | YP_614186 |
Protein GI | 99082032 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.12141 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAAC TTCCCCCGCT CAACAGTTTG CGTGCTTTTG ATGCAGCAGG CCGCCGCCTC AGTTTCCGTG CAGCCGCTGA TGAGTTGGGT GTCACGCAAG GGGCCGTTGC GCAGCAGGTG CGACAACTCG AAGCGCATTT TGATGTGGTC TTGTTTGAAC GGGTGCCGAA GGGCCTGGCT TTTACGCCAG TCGGGCGCAG CTATCACAAC CGGATTGCCG GAGTGTTCGC AGACCTTCGA GCCGCAACTG CCGAGTTGAA GCCAGAGCCG AATAAAGTTC TCATCAGTGT CACGCCAACC TTTGCTGCGA AATGGCTGAT TCCCAATCTT CCCGACTTCG CTACAGCACA TCCGAACATC GATTTGCGGA TCATGGCGAC CGAAAAAGTT TCCAGCTTCC ATAGTGACGG GATAGACCTT GCAGTGCGCC AAGGATCGCC GCCGTTTGGC GCATCACTGG ACGTAACCCT TTTATTCAAG CAATCGCTAG TCGCGGTCGC CGCGCAAAAG CTTGCGGACA AGGGAGGCAC TCCTCTTGAT CCAGAAACCC TTGCCAAACA GCCGAAGGTC CATGACGCCC ATGACCTATG GCCCAGCTAT CTGGCGCATT TGGGCGTACA GGACCAGTCT GCTCGGCACC TTCGTCTGAG CCAGACGTCT CTTGCGGTAG ATGCAGCTAT CGCAGGGCAA GGAGTGGCCT TGGTAAGCCG GTTTCTGGTT GCTCATGACC TTGCAGCCGG ACGTTTGGTC GAGGTTGGCG AAGCCTGGGC CCCAGACAGA AATGACTTCT ATGTCCTCAT GCCGCGAACC GCCAAAAACA ATGCGCCGAC GACCAACGTC TTGACGTGGC TCAAGTCGCG CTCCGCCAAA GATACCTGA
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Protein sequence | MTELPPLNSL RAFDAAGRRL SFRAAADELG VTQGAVAQQV RQLEAHFDVV LFERVPKGLA FTPVGRSYHN RIAGVFADLR AATAELKPEP NKVLISVTPT FAAKWLIPNL PDFATAHPNI DLRIMATEKV SSFHSDGIDL AVRQGSPPFG ASLDVTLLFK QSLVAVAAQK LADKGGTPLD PETLAKQPKV HDAHDLWPSY LAHLGVQDQS ARHLRLSQTS LAVDAAIAGQ GVALVSRFLV AHDLAAGRLV EVGEAWAPDR NDFYVLMPRT AKNNAPTTNV LTWLKSRSAK DT
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