| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2191 |
|---|
| Symbol | |
|---|
| ID | 4078182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2301194 |
|---|
| End bp | 2302420 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638007513 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_614185 |
|---|
| Protein GI | 99082031 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACGA TCCTCTCTTT TGCCGCCCTC TTTCTTTCCG TGATTTTGCT TCAGCTCTCG
ACCGGAGGTG TGGGGCCGCT GGATGCCATT TCCGGCGCTG CGATGGGGTT TGACAACCGC
CAGATCGGCC TTCTGGGCTC GGCGCATTTC TTTGGCTTCT TTATCGGCTG CTGGTGGACC
CCGCGCCTTA TGGGTCGTGT CGGACATTCG CGCGCTTTTG CGGTTTGCAC GGCACTTGGC
GCGATGGGCC TCTTGGCGCA TACGCTCACG GACGATCCCT ACGCATGGGC CGCCATGCGC
ATCGCATCTG GCCTCTGTGT CGCGGGCTGC TACACGGTCA TCGAGGCCTG GATCAACGCA
AAGGTCACCA ATGAGAACCG GGGCCGCACC TCCGGTCTCT ATCGTATTGC CGACACCAGT
GCGTCTCTGG CGGCGCAGCT GTTGATCGCG GTGCTGCCGC CTGCGCATTA CATCTCGTAT
AACCTGCTGG CGATCCTGTG CTGCGCAACG CTGCTGCCGC TGATGATGAC CCGCGCGAGC
CAGCCCGAGA TGCCCGCCGC CCCGCGCCTG AGACCCCGTC TGGCCTGGCG TTGTTCACCC
CTCGGGGTGG CCGGCGTGAT CGTCTCCGCC CTGAGTGGCG CCTCCTTCAG GATGGTTGGC
CCGATCTACG GTCAGGAAGT CGGACTGGTG ATCGACCAGA TCGCCTTTTT CCTTGCCGCC
TTCGTTCTGG GCGGCGCGCT CGCGCAGTAC CCCGTGGGCT GGCTTGCGGA TAAATTCGAT
CGTCGCTGGG TGCTCATCTG GCTCTCAGGC GTCTCGATGA TTGCCTGCGC CGTGACCCTG
CCTGCAAGCG GTGGCGGCAC GATTGCCATC ATGGCGTCGG CGGCTTTCTT CGGCCTGACG
ACAGTGCCGA TCTTTTCTGT CTCTGCCGCG CATGCCAATG ACTTTGCCAC CTCCGAAGAG
CGGGTGGAAC TCTCAGCGGC CTTGATGTTC TTCTACGCCA CGGGCGCGAT TGCCGCACCC
TTTATCGCCT CGGCCCTCAT TGAGGCCTTC GGGCCAGGGG CGCTATTTGT CTTTATCGCA
GTGGGGCATG CGGGGTTGAT CGTCTTTGGC CTTGCAAGGA TGCGCAGCCG CGCCACCCCA
ACCGAACGCA CCCGCTACGT CTATGCGCCG CGCACGTCAT TCACGATCGG CAAGATGCTG
AAACGCGCCC GTGAGGGGCG GCAATGA
|
|---|
| Protein sequence | MRTILSFAAL FLSVILLQLS TGGVGPLDAI SGAAMGFDNR QIGLLGSAHF FGFFIGCWWT
PRLMGRVGHS RAFAVCTALG AMGLLAHTLT DDPYAWAAMR IASGLCVAGC YTVIEAWINA
KVTNENRGRT SGLYRIADTS ASLAAQLLIA VLPPAHYISY NLLAILCCAT LLPLMMTRAS
QPEMPAAPRL RPRLAWRCSP LGVAGVIVSA LSGASFRMVG PIYGQEVGLV IDQIAFFLAA
FVLGGALAQY PVGWLADKFD RRWVLIWLSG VSMIACAVTL PASGGGTIAI MASAAFFGLT
TVPIFSVSAA HANDFATSEE RVELSAALMF FYATGAIAAP FIASALIEAF GPGALFVFIA
VGHAGLIVFG LARMRSRATP TERTRYVYAP RTSFTIGKML KRAREGRQ
|
|---|
| |