Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2189 |
Symbol | |
ID | 4078180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2298764 |
End bp | 2299795 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007511 |
Product | transcriptional regulator |
Protein accession | YP_614183 |
Protein GI | 99082029 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.156364 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCCG CAAAAAACAT CCTCCAGCCG GAGAACCGCC CCCTCAAGAC CGCCGTTCTG GTGATGGATG AGTGTAACAC ATTGTCCTTT GCCGCAGCAG TCGACCCCAT GCGCGCCGCC AATCGGCTGG CGGGGCGGGC GGCTTTTGAC TGGGACTATG TCAGCGCCTC AGCCGAGCCG CCGATGCTCA CCTCAGGCCT CACCGTGCCG ACCACGCCGC TGGCGCGGCT GGATGACTGT GACCTCTTGA TTGTCGTTGC CGGCTTTCAA CTGGCACGCC ATGCCACACC AAGCCTTCTG GCCGGTCTGC GCCGCATTGC GGGCAGTGGC GCCACCATCG CCGGGATCGA CGGTGGCCCC TGGCTCATGG CCGAAGCCGG GCTGCTGGAC GGCCATGCGG CAACGACCCA TTGGGAAGAT TTGGAGAATT TCTCGGCCCG CTTCCCCGAT ATTCACTGTC GCACGGATCG CTTTACCGTC TCTGAGGGGC GCATGACTTC AGGCGGGGCG ACGCCGGCAA TCGAGATGAT GTTGCATATC ATCGGCGCGC GTCACGGGCA TGGCTTTGCC TCACGAGTGG CAGGTCTCTT CCTTTATGAC GGCACCGCCT CGCCCCAGCG CAGCCAGAGC CGCCTTGGTC ATCACAAGCA CAACGCCCTC ACCGCGAAGG CCAACGCCAT AATGGAAGCC GCGCTGGATG ACCCCAAACC GCTGGCGGAA ATCGCCGAGG TGCTCGGCAC CAGCCCCCGC AGCCTGCAAC AGCAATTCCG CCTGCGCCTC AACACAACGC CACAGGATCA CTATCTGCAA CTGCGTCTGG CAGAGGCTCG CCGACTGGTC ACAGACACCA ATCTGCCCTT GATGGAAATC GCGGTGGCGA CGGGGTTCAC GTCGCAATCC ACCTTTGCGC GCGCCTTTCG CACCGCGCAT GGGCTCTCGG CGCGAGAGCT ACGCCAGAAC AGCGCCGAGA CCGCGTTTGC AAGCTACCCT GTGCTCAAGG CAACCAGCCA CGCCAGCCAC AGCACCAACT AG
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Protein sequence | MKSAKNILQP ENRPLKTAVL VMDECNTLSF AAAVDPMRAA NRLAGRAAFD WDYVSASAEP PMLTSGLTVP TTPLARLDDC DLLIVVAGFQ LARHATPSLL AGLRRIAGSG ATIAGIDGGP WLMAEAGLLD GHAATTHWED LENFSARFPD IHCRTDRFTV SEGRMTSGGA TPAIEMMLHI IGARHGHGFA SRVAGLFLYD GTASPQRSQS RLGHHKHNAL TAKANAIMEA ALDDPKPLAE IAEVLGTSPR SLQQQFRLRL NTTPQDHYLQ LRLAEARRLV TDTNLPLMEI AVATGFTSQS TFARAFRTAH GLSARELRQN SAETAFASYP VLKATSHASH STN
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