Gene TM1040_2188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2188 
Symbol 
ID4078179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2297712 
End bp2298629 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content61% 
IMG OID638007510 
Producthypothetical protein 
Protein accessionYP_614182 
Protein GI99082028 
COG category[S] Function unknown 
COG ID[COG3246] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.390095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTTT CCATGAACCG AGAGGTCTTT ATCACCTGTG CAGTGACCGG CTCTGGGGGA 
ACGCAGGATC GCAGCCCGCA TGTGCCTCGT TCGCCCAAGG AAATTGCAGA AAGCGCGATT
GCCGCCGCCA AGGCAGGGGC CGCGATTGTG CATTGTCATG TGCGCGACCC AGAAACCGGC
GCGCCCTCGC GGGATCTTGG TCTTTATCGC GAGGTCACCG ACCGCATCCG CGAGAGCGAT
ACCGATGTGG TGTTGAATCT CACTGCGGGC ATGGGGGGCG ATATCGTCTT TGGCGGGGTC
GAGCGCCCGC TGCCCGTGAC CGAAGACGGC ACCGACATGA TCGGCGCAAG CGCGCGTGTG
GCGCATGTGG CGGAATGCCT GCCGGAGATC TGCACGTTGG ATTGCGGCAC CATGAATTTT
GCCGAGGCCG ACTATGTGAT GACCAACACG CCCGGCATGT TGCAGGCGAT GGGGCAGATG
ATGACGGATC TTGGCGTGAA GCCCGAGATC GAAGCCTTTG ACACCGGGCA TCTTTGGTAT
GCCAAGCAAC TGGTCAAAGA CGGCGTGCTG AAATCGGATG CTCTGGTGCA GCTCTGCATG
GGGGTCCCAT GGGGGGCGCC CAATGATCTC AATACTTTTA TGGCGATGGT CAACAATGTG
CCCGACGACT GGAACTGGTC GGCGTTCTCG CTGGGGCGTG ATCAGATGGC TTATGTGGCG
GCCTCAGTGC TGGCAGGCGG CAATGTGCGC GTGGGGCTGG AGGATAACCT CTATCTCGAC
AAGGGCGTGC TGGCCGAAAA CTGGCAACTG GTGGAGCGCG CTGGCACCAT CGTGTCCAAC
CTTGGCGCGC GTGTGATCAC GCCGGCAGAA GTGCGCGAGA AGCTTGGCCT GCAGAAACGC
GCCCCGATCA CCAAGTAA
 
Protein sequence
MPLSMNREVF ITCAVTGSGG TQDRSPHVPR SPKEIAESAI AAAKAGAAIV HCHVRDPETG 
APSRDLGLYR EVTDRIRESD TDVVLNLTAG MGGDIVFGGV ERPLPVTEDG TDMIGASARV
AHVAECLPEI CTLDCGTMNF AEADYVMTNT PGMLQAMGQM MTDLGVKPEI EAFDTGHLWY
AKQLVKDGVL KSDALVQLCM GVPWGAPNDL NTFMAMVNNV PDDWNWSAFS LGRDQMAYVA
ASVLAGGNVR VGLEDNLYLD KGVLAENWQL VERAGTIVSN LGARVITPAE VREKLGLQKR
APITK