| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2156 |
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| Symbol | |
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| ID | 4076755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2264063 |
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| End bp | 2266777 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007476 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_614150 |
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| Protein GI | 99081996 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0004] Ammonia permease |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00836] ammonium transporter |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.145891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.187979 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGACC TCGACGCCTC GTGGATTCTG GTCTGCGCGC TTCTTGTGCT GCTGTTGCAG
GCTGGCTTCC TCTGTCTTGA GGCTGGCACC GTTCGGGCGA AAAATTCCGC CAATGTCGCG
CTGAAAAACC TGTCCGATGT CTGCATCGTC AGTACCTGTT TCTGGCTGGT CGGCTTTGGC
CTCATGTTTG GCGAGAGCTT CAATGGCCTC TTTGGAACCA CACAGTTTTG GCTCGCGCTC
GACAATGACA GCGGTCACGC GGCGTCGATT TTCCTGTTTC AGATGGCCTT TGCGGCAAGT
GCAGCCACGA TCGTCTCGGG CGCAGTTGCC GAGCGGGAGC GATTTCTGGG CTATATGGTG
GTCTCTGTTG CGCTCAGCGC CCTTGTGTAT CCGGTTGTCG GGCATTGGAT CTGGAACCAG
GCGGGCTGGC TGCGCCAGAT GGGATTTGTC GATTTTGCAG GCGCGACGGT TGTACACAGC
GTGGGGGGAT GGACCGCTCT GGTGACCATT ATCATCCTCG GGCCGAGGCT CGGGCGATAT
GGCCCCAAGA AACGTCGGTT TGATGAGTAC TCGATCTCTC TGGTCACGCT GGGCGGATTG
CTCTTGTGGG TCGGCTGGGG TGCGTTCAAC GGCGGCTCCG CTATGGCGTT TGGGACCGGT
GTTGGCCCGA TTATTGCGCG CACCATGCTG CTGGCGGCAG GCGCAGGGGT GGCGAGCATT
GCCATCGGGC TTGGCCTTTT TCGGCACGTC AGGGCAGAGC TTTTGGTGAA CGGCTTTCTC
GGAGGATTGG TCGCGGGCAC CGCCGGGGTG CACCTGATGA CAGGCACAGT TGCCTTTGGC
ATCGGCGCCC TTGGCGCAGT CACCGTAATC ATCGCCCGCG ATATACTCGA CGCGCTCAAG
ATCGACGATG TTGTGGGCGC CGTCCCCGTG CATCTGGCCG CGGGGTTGAT CGGGACGCTC
TCGATTGCCT TCACTGCCCC GGTTGACCTG TTGCCCGCAG GCAGCCGGCT GGCACAGCTG
GGCATTCAGG CGCTGGGTAT CACTGCAGTT GGCGGATGGG TGGTCTGCTC GATGGCGCCG
CTGATCCTGC TGCTGCGCGC AAGAGGTTTG CTGCGCGTCC ACCCCAAGGA CGAGGTGCGC
GGGCTGAATC TCACCGAAAA CAACCAACGA AACGCGCTTA TGGACCTGCT GGCCGAAATG
AAACGGCATC AGCGTTCCGG CTCTTTCAGC CGCCGCGTAC GCATCGACCG GTCCACCGAA
TACGGTGTGC TTGCCTACCG CTACAACCGG GTTCTCGACC GGGTGGAGGC GGAAATCAAC
GCACGTGTCG ACTCGATCCG CAAGGAACGC ATGAGCCGCC TTTTGGCCGA AGAGGCGTTT
GAATCCATGC GCGAGGCGCA AGAAGAAAAC GCCTGGTCGG CGCGGCATGA CAAACTCACC
GGACTTGGCA ACCGCAAGTA CCTCGAAGAG GTTGCGGTCG AGACCAGCAC CGGACCACTT
GGCGCGACAT TGCTCATTGC GATCGACCTA GATCGGTTCA AGGAGATCAA TGACACCTAC
GGCCATGAGG CAGGAGATGT GGTGCTGGAA CACACTGCCC AGCGGCTCTC CGAAAAGATC
AGAACAGGGC GTGATTTTGC CTTCCGCATC GGCGGTGATG AGTTTGTAGT CCTCATGGAG
TTTGCGGGCA CCCAAGACGA CGCTTTTGAA TACTGCTCGG ACTTGTTGTT CGAATTGCTG
CAACCCGTCA GATACAAAGC AACCGATCTG CAGGTCGGTG CCTCCATTGG ATTTGCCCTC
TGCAAGCCGC CCGAAACGCT CGGCGCGGCG CTGCGACGCG CAGATCTTGC GCTCTATGCT
TCAAAGGCTG ACGGACGCTC CTGCGTCAAC GCCTATTCCG CCTCCATCGG ATCGGCTCAT
GACGAAAAGA TGAACCTCAT ACGGGATTTC AAACAGGCTT TCGCCAATAA TGAAATCGAG
GTGACGCTGC AGCCGCAGAT CGATGGCAAG ACCATGGAAA TCGCCGGCTG TGAGGCGCTG
GCGCGCTGGC ACCATCCCGT GCGCGGCATC GTGAGTCCGG ATGTTTTTGT ACCCGTCGCA
AAAGAAGTGA ACATGCTGGC CGATCTTGAT CGCCGAATTC TCGATCTTGC CCTTGCGGCG
TATTGGAATT TTGCGAGCCA CGGCATCGCG CTTCCCAGCC TCTCGGTGAA TGTCTCGGCG
GAGCGGCTGG GGCACCCCGA CTTGATCAAG GAACTCCAGC AGCGCGAGGA TCTGCCACCA
GATGGATTGG CGTTTGAACT CCTTGAAACG GTCTTTCTCG ATCAGTTGAC CGAGAATTAC
GCCAACCAGA TTGCCGCGCT CAAGGCGATG GGCATCGCAA TTGAAATCGA TGACTTTGGC
ACCGGGCACG CCAGCATCGC GGGGGTGCTC GCCCTGAAGC CCGACCGGCT CAAGATCGAC
CGGATGTTCA CCTCCGGTAT TGATGAAAAA CCCGCCAGGC GCGATCTGAT GCGCGGCCTC
ATCGAGATGG CCGCAAGTGC TGGGGCAGAA ACGGTGGTTG AGGGAGTCGA GACGGAGGCG
CAGGCACAGG TTCTGTCGGA GCTAGGCGCA GATGTGCTGC AAGGCTTTGC CTTTGCCCGC
CCGATGGATC AGGAGCGCTT TTTGCTCTGG GCGCAGGACT GGAATGCAGC GCGCCAGATG
CCAAAGACCG GATAA
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| Protein sequence | MSDLDASWIL VCALLVLLLQ AGFLCLEAGT VRAKNSANVA LKNLSDVCIV STCFWLVGFG
LMFGESFNGL FGTTQFWLAL DNDSGHAASI FLFQMAFAAS AATIVSGAVA ERERFLGYMV
VSVALSALVY PVVGHWIWNQ AGWLRQMGFV DFAGATVVHS VGGWTALVTI IILGPRLGRY
GPKKRRFDEY SISLVTLGGL LLWVGWGAFN GGSAMAFGTG VGPIIARTML LAAGAGVASI
AIGLGLFRHV RAELLVNGFL GGLVAGTAGV HLMTGTVAFG IGALGAVTVI IARDILDALK
IDDVVGAVPV HLAAGLIGTL SIAFTAPVDL LPAGSRLAQL GIQALGITAV GGWVVCSMAP
LILLLRARGL LRVHPKDEVR GLNLTENNQR NALMDLLAEM KRHQRSGSFS RRVRIDRSTE
YGVLAYRYNR VLDRVEAEIN ARVDSIRKER MSRLLAEEAF ESMREAQEEN AWSARHDKLT
GLGNRKYLEE VAVETSTGPL GATLLIAIDL DRFKEINDTY GHEAGDVVLE HTAQRLSEKI
RTGRDFAFRI GGDEFVVLME FAGTQDDAFE YCSDLLFELL QPVRYKATDL QVGASIGFAL
CKPPETLGAA LRRADLALYA SKADGRSCVN AYSASIGSAH DEKMNLIRDF KQAFANNEIE
VTLQPQIDGK TMEIAGCEAL ARWHHPVRGI VSPDVFVPVA KEVNMLADLD RRILDLALAA
YWNFASHGIA LPSLSVNVSA ERLGHPDLIK ELQQREDLPP DGLAFELLET VFLDQLTENY
ANQIAALKAM GIAIEIDDFG TGHASIAGVL ALKPDRLKID RMFTSGIDEK PARRDLMRGL
IEMAASAGAE TVVEGVETEA QAQVLSELGA DVLQGFAFAR PMDQERFLLW AQDWNAARQM
PKTG
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