| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2150 |
|---|
| Symbol | |
|---|
| ID | 4076749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2257115 |
|---|
| End bp | 2258545 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007470 |
|---|
| Product | Glu/Leu/Phe/Val dehydrogenase |
|---|
| Protein accession | YP_614144 |
|---|
| Protein GI | 99081990 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0334] Glutamate dehydrogenase/leucine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.25294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATC TCAAAGAACC AAGCTTCCGT GAAAGTGTGG ATCTCATGTT CAACCGCGCC
GTGGCGCTGA TGGATTTGCC GCCGGGGCTT GAGGAAAAGA TCCGCGTCTG TAACGCCACC
TACACGGTCC GCTTTGGGGT GCGCCTGCGC GGGCAGATCC ACACGTTCAC CGGGTATCGC
TCGGTCCACT CGGAGCATAT GGAGCCGGTC AAAGGCGGCA TTCGTTACGC GATGGGGGTG
AACCAGGACG AGGTGGAGGC GCTCGCGGCG CTGATGACCT ACAAATGCGC GCTGGTGGAA
GCGCCCTTTG GGGGCTCCAA GGGCGGTCTG CGCATCGACC CGCGTCAGTA TGACGAACAC
GAGCTAGAGC TGATCACCCG TCGTTTTGCC TATGAGCTGG CCAAACGCGA CCTGATCAAC
CCCTCGCAGA ACGTGCCCGC GCCCGACATG GGCACCGGCG AACGCGAGAT GGCCTGGATG
GCGGACCAAT ACGCCCGGAT GAACACCACG GACATCAACG CCCGCGCCTG TGTCACCGGC
AAGCCGCTCA ATGCTGGCGG TATTGCAGGC CGCGTCGAGG CCACGGGCCG GGGCGTGCAG
TACGCACTGC AGGAGTTCTT CCGGTACGAG GAAGACAAGG CCAAGGCCGG TCTCTCTGGC
ACCCTCGATG GCAAGCGCGT CATCGTGCAG GGCCTCGGGA ATGTGGGCTA TCACGCGGCC
AAGTTCCTCT CCGAGGAAGA TGGCTGCAAG ATCGTTGCGG TGATTGAACG CGATGGCGGT
CTCTACGATG AGAACGGGCT CGACATCGAA GACCTGCGCG CGTGGATCGA AAAGCATGAC
GGCGTCGATG GCTACCCGTC GGGACGCTAC ATCAAGAACG GCGCCAAATA CCTCGAAGAG
GACTGCGACA TCCTGATCCC GGCGGCGCTT GAGGGGGTGA TCAACCTCTC CAACGCCGAA
AACGTGAAGG CCAAGCTGAT CATCGAGGCT GCGAACGGTC CTGTGACCGC GGGCGCAGAT
GAGATCCTGC GCAAGAAGGG CACGGTGATC ATTCCGGACA TGTATGCCAA CGCCGGCGGT
GTGACGGTTT CCTACTTTGA GTGGGTCAAG AACCTCTCGC ATATCCGCTT TGGCCGGATG
CAGCGCCGTC AGGAAGAGGC ACGCCACCAG CTTGTGGTCG ATCAACTGGA AATGCTCTCT
GAGAGCATGG GCAAGACATG GTCGCTCGAT CCCAAGTTCA AGGAAAAATA CCTCCGCGGT
GCAGGTGAGC TGGAGCTGGT GCGCTCGGGT CTCGATGACA CCATGCGGAT TGCCTATCAG
TCCATGCGGC AGGTGTGGCA CGAACGCGAT GACGTCTCTG ATCTGCGCAC CGCCGCATAT
CTCGTCTCCA TCGACAAGGT TGCCTCGAGC TACCGCGCCA AGGGCCTCTG A
|
|---|
| Protein sequence | MSNLKEPSFR ESVDLMFNRA VALMDLPPGL EEKIRVCNAT YTVRFGVRLR GQIHTFTGYR
SVHSEHMEPV KGGIRYAMGV NQDEVEALAA LMTYKCALVE APFGGSKGGL RIDPRQYDEH
ELELITRRFA YELAKRDLIN PSQNVPAPDM GTGEREMAWM ADQYARMNTT DINARACVTG
KPLNAGGIAG RVEATGRGVQ YALQEFFRYE EDKAKAGLSG TLDGKRVIVQ GLGNVGYHAA
KFLSEEDGCK IVAVIERDGG LYDENGLDIE DLRAWIEKHD GVDGYPSGRY IKNGAKYLEE
DCDILIPAAL EGVINLSNAE NVKAKLIIEA ANGPVTAGAD EILRKKGTVI IPDMYANAGG
VTVSYFEWVK NLSHIRFGRM QRRQEEARHQ LVVDQLEMLS ESMGKTWSLD PKFKEKYLRG
AGELELVRSG LDDTMRIAYQ SMRQVWHERD DVSDLRTAAY LVSIDKVASS YRAKGL
|
|---|
| |