| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2148 |
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| Symbol | |
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| ID | 4076462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2255558 |
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| End bp | 2256244 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007468 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_614142 |
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| Protein GI | 99081988 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.726576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAACTGC CCTCTGTTTT CGCCGTTCTT TCCCGTCTCG ATTGCCATTA CCGACTAATG
TCGGTAATAG AGTGTATGCG TACCCGCCTC TCCCGCAGTG CCCGCAGGGC CGAAATCCTA
GGAAACGCCC AAAAGCTGAT CGCCGCGCGT GGCTTCAGTG GCACCGAGAT GGAAGACATT
CGCCTTGCCA GCGGCATTTC ACGGGGCGGG CTCTATCATC ATTTTGCCAA CAAGCATGCG
GTCCTTGATG CGCTGGTAGC AGAGGAGGTG CGCCGTCTTG CAGACCAGCT AAAAGCCGCG
CAAGGCTCTC CGATCCCCGC GCTTCTTCGC GTAGGGTCAA GCGACCTTGG CAATGATCCC
GGTCTGGTCT CGCATCTTCA CACGCCCGAG GAGAAACGCG CTTACCTGTC GAGCCTTGAA
CAGGCGATAC CCGCAGAGCT CGGCCCGGTC CTGCACGAAA GACTGCGGGG CCACACCGCT
GAGGGCGCAG CCCCCGCCCA TGTCGCCGAG CTCTTTTTGA CGATCACCGC TCATATCAAC
CGCCGCCGCA TATTGAACGA GTGGCCCCCA GAAGAGGCAG CGGGATTTAC CGCGACAGCG
CTTCGGGCTC TGTTGCCCTT GCTGACATCG CAAGCGGAGC TCCAGCCGGT CATCGCAGAA
CTGAAGCGGG TGGCGGCGAC ATCCTGA
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| Protein sequence | MQLPSVFAVL SRLDCHYRLM SVIECMRTRL SRSARRAEIL GNAQKLIAAR GFSGTEMEDI
RLASGISRGG LYHHFANKHA VLDALVAEEV RRLADQLKAA QGSPIPALLR VGSSDLGNDP
GLVSHLHTPE EKRAYLSSLE QAIPAELGPV LHERLRGHTA EGAAPAHVAE LFLTITAHIN
RRRILNEWPP EEAAGFTATA LRALLPLLTS QAELQPVIAE LKRVAATS
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