| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2136 |
|---|
| Symbol | nrdR |
|---|
| ID | 4076450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2242735 |
|---|
| End bp | 2243202 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638007456 |
|---|
| Product | transcriptional regulator NrdR |
|---|
| Protein accession | YP_614130 |
|---|
| Protein GI | 99081976 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.826839 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.972579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGCC CATTTTGCGG AAATGTCGAT ACGCAAGTAA AGGACTCGCG TCCGGCAGAG
GATCACGTTT CGATCCGCCG ACGCCGGTTT TGCCCTGCCT GCGGTGGCCG TTTTACCACG
TATGAACGGG TGCAGCTGCG CGACCTCGTG GTGATCAAGA CCAACGGCAA GCGCGAGGAT
TTCGACCGCG ACAAGCTAGA ACGCTCCATT CGCATCTCGA TGCAGAAACG CCCGGTGGAC
CCGGAACGGA TCGATCAAAT GATCTCGGGC ATCGTGCGCC GTCTGGAGAG CATGGGCGAG
ACGGATATTC CTTCCAAAAA GATCGGCGAA ATCGTGATGG AGGCTCTGGC CCGCATCGAC
ACCGTCGCCT ATGTTCGCTT CGCAAGCGTC TACAAGAATT TTCAGGCGGC CGACGACTTT
GAGGATTTTG TGCACGAGCT GCGCCCCCCT GCGCCGCCCG AGAGCTGA
|
|---|
| Protein sequence | MRCPFCGNVD TQVKDSRPAE DHVSIRRRRF CPACGGRFTT YERVQLRDLV VIKTNGKRED
FDRDKLERSI RISMQKRPVD PERIDQMISG IVRRLESMGE TDIPSKKIGE IVMEALARID
TVAYVRFASV YKNFQAADDF EDFVHELRPP APPES
|
|---|
| |