| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2135 |
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| Symbol | |
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| ID | 4076449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2241583 |
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| End bp | 2242659 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638007455 |
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| Product | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase |
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| Protein accession | YP_614129 |
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| Protein GI | 99081975 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.885222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCTCG CCCTGTCGCT CGGGCGGCGA GGGCAGGGTC GGACTTGGCC AAACCCGGCG
GTCGGCTGTG TAATTGTCCA AAAGGGTCGC GTGGTGGGCC GGGGCTGGAC CCAGCCCGGA
GGCCGTCCCC ACGCCGAACC CATGGCGCTG GCGCAGGCGG GAGCCGCAGC GCGCGGCGCC
ACTGCCTATG TGAGCCTCGA ACCCTGTGCC CATCACGGCA AAACCCCCCC CTGCGCGCAA
GCGCTGATCG AGGCCGGTGT TGCCCGTGTC GTCGCCGCCA TCGAAGACAG CGACCCGCGT
GTCAGCGGTC AGGGCTTTGA GATGCTGCGC GCGGCGGGGA TTTCCGTTAC CACCGGAGTG
CGCGCCGAGG AAGCTGGCTT TGATCACGAA GGGTTCTTTC TAAAAACGGA ACAGGGCCGC
CCTTTTGTGA CGCTGAAACT CGCCGCGAGT TTTGATGGTC GTATTGCCAC CGGCTCCGGT
CAAAGCCAGT GGATCACCGG GCCGGAGGCG CGCCGTGTGG TGCATGCGAT GCGTGCGCGT
CACGATGCTG TCATGGTCGG GGCAGGGACG GCACGCGCGG ATGACCCTTC GCTCACCGTG
CGCGATCTGG GGATTGACCA GCAGCCGGCG CGGGTGGTGG TCTCGCGCCA TCTTGACCTG
CCGCTCATCA GCAAGCTTGC GCGCAGCGCA GCGGAGGTCC CGCTCTATCT TTGCCATGGC
ACAGGCGCGG ATACCGAACG TCTGCGGGCC TGGGACGGGC TGGGAGCGCA TCTGTTGCCG
TGCAACGCTC TTGGCACCCA GCTTGACCCG CATGATGTGC TGCAGCAACT GGGCAGCGTA
GGACTCACAC GCGTGTTCTG CGAAGGAGGA GGCGCGCTGG CGGCCAGCCT GCTGGCGCAT
GACCTCGTGG ATGAGTTGGT GGGCTTCAGT GCTGGTCTGA CGATCGGTGC CGAAGGGCTG
CCCTCCATCG GGGCGCTTGG CATTGGCCAC CTTTCAGAGG CCCCAAGGTT CGACCTTCAT
GAGACACGCC CGATTGGCGC CGACATCCTG CACCGCTGGC GTCGCCCTCA GAACTGA
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| Protein sequence | MGLALSLGRR GQGRTWPNPA VGCVIVQKGR VVGRGWTQPG GRPHAEPMAL AQAGAAARGA
TAYVSLEPCA HHGKTPPCAQ ALIEAGVARV VAAIEDSDPR VSGQGFEMLR AAGISVTTGV
RAEEAGFDHE GFFLKTEQGR PFVTLKLAAS FDGRIATGSG QSQWITGPEA RRVVHAMRAR
HDAVMVGAGT ARADDPSLTV RDLGIDQQPA RVVVSRHLDL PLISKLARSA AEVPLYLCHG
TGADTERLRA WDGLGAHLLP CNALGTQLDP HDVLQQLGSV GLTRVFCEGG GALAASLLAH
DLVDELVGFS AGLTIGAEGL PSIGALGIGH LSEAPRFDLH ETRPIGADIL HRWRRPQN
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