| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2067 |
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| Symbol | |
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| ID | 4077994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2170824 |
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| End bp | 2172110 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007386 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_614061 |
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| Protein GI | 99081907 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATTC TCGGCAGTCT TTTTATCCTG TGTGTGCTGC TCCTCATTGG GGTGAGCGTG
CCTCTGGCCT TTGGTGGCGT GCTGGTCTTT ATCGGCGTCT TTGGCGGCCA TGATGTGACC
GGGTTCCTGC CCACGGGGCA CTGGAAGATG AATTCCATCG TGCTGCTTGC GATTCCGCTG
TTCATTCTGG CAGGTGCTAT CATGGAGCGG GGGCGGATCG CGGCGCCGCT GGTGTCGGTG
GCGGAGCTTC TGGTGGGGCG CATCCACGGG GGGCTCAGCG CGGCGGCGGT GTTCGCCAGC
GGTATCTTCG GCTCGATCTC GGGCTCTGCG GCGGCGACGC TGACCTGTAT CGGGTCGATT
ATGATGCCGC ACCTGAAGGC CGCGAATTAC CCGCGCGGCC CGGCGGCGGC GCTGATTGTG
GCGGCCTGTC CCTTGGGGCT CCTGATCCCG CCGTCGTCGT CGCAGATCCT TTATGCGTGG
GTGGCGCAGC AATCGGTGCT GAAGTGTTTC CTTTCGACCG TGGTGCCGGG GCTTATCCTG
ATTACGCTTT TGTGCATGGT GAACTACGTA CTGATGCGCA AGGCGGACCT GAAACTGCTC
GAACGCCCGG CAAGCTACCC GCAGGAATTC GTGCGCCGCG GTGGGCGGGC CTTTCCGGCG
CTGTTGATGC CGATCATCAT TCTTGGCGGT ATCTACGGCG GCATCATGAC CCCGACCGAG
GCCGCAGGCG TGGCGGTGAT CTATGCCATT CCCGTTGGCC TGTTCATCTA TCGCGGCCTT
ACGCCTCAGA ATATCTGGCC GACCCTGCGC TATGCGGGCA CCACCATCGG TGTGGTGATG
CTGATGGTCT TTGTGGTAGT GATCGTCAGC CGCTTTCTGG TCTTTGAAGA CATCCCCGGG
ATGGCCAAGG ATCTGATCTT CTCGATCTCG GACAACCCGA TCGTGATCTT GCTGATGGTC
AATCTGGTGA TGATCCTCAT CGGTATGCTG ATGGATGATA TTTCAGGGCT GTTGCTGTCA
GCACCGCTCC TGTTGCCCAT CGTACAAAGC GTCGGAATGG ACCCGGTGCA TTTTGCCGCC
GTCCTTGGCG TCAACCTCGG CATGGCCAAC ATCACGCCGC CCACGGCACC GCTGTTGTAT
CTAGGTGCAA AGGTCACCGA CACACCCGTG AGCGAGATGC TGAAGCCCAC CTTCATCATG
ATCCTGTTTG CATGGCTGCC GACGCTGCTG ATCACCACAT TTGTGCCCGA GGTGGCGCTG
TGGCTGCCCA ATTTTGTCTT TGGCTAA
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| Protein sequence | MIILGSLFIL CVLLLIGVSV PLAFGGVLVF IGVFGGHDVT GFLPTGHWKM NSIVLLAIPL
FILAGAIMER GRIAAPLVSV AELLVGRIHG GLSAAAVFAS GIFGSISGSA AATLTCIGSI
MMPHLKAANY PRGPAAALIV AACPLGLLIP PSSSQILYAW VAQQSVLKCF LSTVVPGLIL
ITLLCMVNYV LMRKADLKLL ERPASYPQEF VRRGGRAFPA LLMPIIILGG IYGGIMTPTE
AAGVAVIYAI PVGLFIYRGL TPQNIWPTLR YAGTTIGVVM LMVFVVVIVS RFLVFEDIPG
MAKDLIFSIS DNPIVILLMV NLVMILIGML MDDISGLLLS APLLLPIVQS VGMDPVHFAA
VLGVNLGMAN ITPPTAPLLY LGAKVTDTPV SEMLKPTFIM ILFAWLPTLL ITTFVPEVAL
WLPNFVFG
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