| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2065 |
|---|
| Symbol | |
|---|
| ID | 4077992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2169390 |
|---|
| End bp | 2169740 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638007384 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_614059 |
|---|
| Protein GI | 99081905 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.383791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA TCACCTACGC CCACACCACC CAGCGCATGA GCCAGATCGT CACCCATGGC
GACACCATCT ACCTTGCCGG TCAGGTCGGC ACCGCGGGCG CAAGCGTCAC CCAGCAGACG
CAGGATTGCC TTGACAAGAT CGACGCGCTG CTGGCCGAGG CGGGCTCCTC CAAAGAGCGC
ATCCTGCAGG CCACCATCTG GCTCGCGGAT ATGAGCGATT TTGCCGAGAT GAATGCCGTC
TGGGATGCCT GGGTGCCTGA GGGGCGCGCA CCGGCGCGGG CCTGTGGGGA ATCCAAGCTC
GCCACGCCCG ATTTCACCGT GGAAATCCTG ATCATCGCCG CCAAAGGCTG A
|
|---|
| Protein sequence | MSDITYAHTT QRMSQIVTHG DTIYLAGQVG TAGASVTQQT QDCLDKIDAL LAEAGSSKER
ILQATIWLAD MSDFAEMNAV WDAWVPEGRA PARACGESKL ATPDFTVEIL IIAAKG
|
|---|
| |