| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2054 |
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| Symbol | |
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| ID | 4077981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2156958 |
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| End bp | 2158784 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007373 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_614048 |
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| Protein GI | 99081894 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCC CAACCCGACA CCCGACCCCC AACGTCACAA CGGGCGCCCT GCCCGCCTCC
CGTAAGATCT ATGTGGCAGG CGAGATGCAT GAAGGCATCC GCGTGCCGAT GCGCGAAATC
GCCACCCACC CGACTGCGGG CGAGGCGCCG CTACCGGTTT ATGACAGCTC CGGCCCCTAT
ACCGACCCCG ATGTGTCAAC CGACATCCGC GAGGGATTGG CCCCGTTGCG CGCGGCGTGG
ATCAAGGCCC GCTGCGATGT TGAGGCCTAT AGTGGCCGCG ATGTGACCGC TGCAGACAAT
GGCTTTGTCG AAGGCGATCG GCTGGTGCCT GAGTTTCCTG TAAAACCGGC GCCCCTGCGC
GGGAGGCAGC GGGCCGCTCC GACTCAGCTG GCCTATGCGC GCGCAGGAAT CATTACGCCC
GAGATGGAAT TCGTGGCGAT CCGAGAAAAC CAATTACGCG ATCTGTCGCC CTGTCATTGT
GCGCGCGACG GGGAGGATTT TGGCGCCAAT ATCCCCGACT ACGTGACGCC AGAGTTTGTC
CGCGCTGAAA TCGCCGCAGG GCGCGCCATC ATCCCCGCCA ATATCAACCA CCCGGAGCTG
GAGCCGATGA TCATCGGCCG CAATTTCAAG GTGAAGATCA ACGCCAATAT GGGCACCTCT
TCGGTGACCT CCTCGATGGA GGAGGAAGTG GACAAGCTGG TCTGGGCGAT CCGCTGGGGC
GCAGATACGG TGATGGATCT CTCGACGGGC CGCAACATCC ACAACACCCG CGAATGGATC
ATCCGCAACA GCCCGGTGCC CATCGGCACC GTGCCGATCT ATCAGGCGCT GGAGAAGGTG
AACGGCATCG CCGAGGATCT GACATGGGAG GTGTTTCGCG ACACGCTGAT CGAGCAGGCG
GAACAGGGCG TCGATTACTT TACCATTCAT GCGGGCGTCC GGCTGCATAT GGTGCCGATG
ACCGTGGAAC GCGTGACGGG GATCGTGTCG CGCGGTGGGT CGATCATGGC GAAATGGTGC
CTGCATCACC ATCGCGAGAG CTTCCTCTAT GAGCACTTCG AGGAGATCTG CGACATCTGT
CGGCAGTATG ACGTGAGCTT CTCGCTGGGT GATGGCTTGC GTCCCGGGTC GATTGCCGAT
GCCAATGACG CCGCGCAATT TGCCGAGCTG GAAACGCTGG GCGAGCTCAC AAAAATCGCC
TGGGCCAAGG ACTGTCAGGT GATGATCGAG GGGCCGGGCC ATGTGGCGAT GCACAAGATC
AAGGAGAACA TGGACAAGCA GCTGGAGTGC TGCCACGAGG CGCCGTTTTA CACGCTCGGC
CCGCTCACCA CGGATATTGC GCCGGGGTAC GATCACATCA CCTCCGGGAT TGGCGCGGCG
ATGATCGGCT GGTTTGGCTG CGCGATGCTG TGTTACGTGA CGCCCAAGGA ACATCTGGGC
CTGCCGGACC GCGATGACGT TAAAACCGGG GTGATCACCT ACAAGATCGC CGCCCATGCC
GCTGATCTGG CCAAGGGTCT GCCCGGCGCG CAGCGGCGCG ATGATGCGCT GAGCCGCGCG
CGGTTTGAAT TCCGCTGGGA GGATCAGTTC AACCTCTCGC TCGACCCGGA GACCGCGCAG
AGCTTCCACG ACGAGACCCT GCCCAAGGAG GCCCACAAGG TCGCGCATTT CTGTTCCATG
TGCGGGCCAA AGTTCTGCTC CATGCGGATC AGCCACGACA TCCGCGCCGA AGCCCAGAAA
GAAGGGTTTG AGGCGATGGC GGCAAAATTC CGCGAAGGCG GTGAACTCTA TGTACCACTG
AAGGACACCG CACCAGAAGA GGCCTGA
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| Protein sequence | MNTPTRHPTP NVTTGALPAS RKIYVAGEMH EGIRVPMREI ATHPTAGEAP LPVYDSSGPY
TDPDVSTDIR EGLAPLRAAW IKARCDVEAY SGRDVTAADN GFVEGDRLVP EFPVKPAPLR
GRQRAAPTQL AYARAGIITP EMEFVAIREN QLRDLSPCHC ARDGEDFGAN IPDYVTPEFV
RAEIAAGRAI IPANINHPEL EPMIIGRNFK VKINANMGTS SVTSSMEEEV DKLVWAIRWG
ADTVMDLSTG RNIHNTREWI IRNSPVPIGT VPIYQALEKV NGIAEDLTWE VFRDTLIEQA
EQGVDYFTIH AGVRLHMVPM TVERVTGIVS RGGSIMAKWC LHHHRESFLY EHFEEICDIC
RQYDVSFSLG DGLRPGSIAD ANDAAQFAEL ETLGELTKIA WAKDCQVMIE GPGHVAMHKI
KENMDKQLEC CHEAPFYTLG PLTTDIAPGY DHITSGIGAA MIGWFGCAML CYVTPKEHLG
LPDRDDVKTG VITYKIAAHA ADLAKGLPGA QRRDDALSRA RFEFRWEDQF NLSLDPETAQ
SFHDETLPKE AHKVAHFCSM CGPKFCSMRI SHDIRAEAQK EGFEAMAAKF REGGELYVPL
KDTAPEEA
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