| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2017 |
|---|
| Symbol | |
|---|
| ID | 4077474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2119401 |
|---|
| End bp | 2121182 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638007332 |
|---|
| Product | peptidoglycan glycosyltransferase |
|---|
| Protein accession | YP_614011 |
|---|
| Protein GI | 99081857 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.631285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA CGCCCCTGCG CCCCCTCGCC CGCATCCTGC CCGCCCGCGC GCGCGGCGAG
AACCCCGACC TCATCGAGCG CGAAAACCTC GCCCAGCGCC ACAGCGAGAT GGAAGCCCGT
GCCCGCACCC GCGCCGAGGG GCGTCTTCTG GTGCTCGCGG CCTTTTTTGT CTGCGCCTAT
GTGGCGATCG GCGGACGGAT GGCGATGATG GCCACCTCGG AGCCGGCAGA GCCCGTTTCC
GTGAGCGGCA GCGCCATCGC CAACCAGCGC GCCGACATCG TTGACCGCGA AGGCCGCATC
CTCGCCACCA ATTTCGAGAC CTTCTCGCTC TATGCCCAGC CGCCGCAGAT GGTGGAGCCG
CTGGTGGCGG CGGAAAAACT GGTCTCGATC TTTCCGGATC TCGATCACGA GCGTCTGGTC
AAGGATTTCA CAGGAAGCCG CAAGTTCCTC TGGATCAAGA AGAAAATCAG CCCCGAGCAA
ATGCAGGCGG TGCATGACAT CGGCGATCCC GGCCTGATGT TTGGCCCGCG CGAGATGCGC
CTTTACCCCA ACGGCAAGCT CGCCGCACAT GTGCTGGGTG GGGCCTCTTT TGGCAAGGAA
GGCGTGAACG CCGCCGAGGT GATCGGTGTT GCAGGCGTGG AAAAACAGTT CGATGACTAC
CTGCGTGACC CGGCCAATGG CGGCAAGCCG CTGGAATTGA GCCTCGATCT CTCGGTGCAG
CACGCCACCG AAGAAGTACT CTATGGCGGC ATGAAGCTGA TGAACGCCAA GGGCGCAACC
TCGATCCTGA TGGATGTACA CACCGGCGAG GTGATCTCGG TGGCCTCGCT GCCCGATTTT
GATCCCAACG AGCGCCCACG CCCGCCCACC TCGGGCTTTG ACCCGTCCGA AAGCCCGCTC
TTCAACCGTG CCGTTCAGGG CGTCTATGAG CTTGGCTCGA CCTTCAAGAT CTTTGCCGCG
GCTCAGGCCA TCGAGCTTGG CCTTGTGAAC CCGGAAACCG TGATCGACAC CCGCGGCCCA
TTGCGCTGGG GCAAATTCTC CATCCGGGAT TTTCGCAACT ACGGCAACGA GATGACCGTC
TCGCGCATCA TCGAAAAGTC CTCCAACATC GGGACCGCGC GGCTCGCGCA GCAGATCGGA
GCCGAACGCC AGCGCGCCTT CCTCGGAGAG CTTGGCATGT TGGAGCCGAC CCCGTTTGAG
ATCGTCGAAG CGTCGGGCGG CCAGCCGCTC TTGCCGAGAA ACTGGTCGGA GCTGTCGACC
ATGACCATTT CCTATGGTCA CGGGATTTCA ACCACGCCGA TGCATCTGGC GGCGGGCTAT
GCGGCCATTG CCAATGGCGG CCGGCTCGTG AAACCCACGA TCCTTAAGCA GACCGGCCCC
CGCCTCGGGG AGCGCGTGCT CAGCAAAGAG GTTGCCGAGG CTTCACTCGA GATGCTGCGC
AGGGTGGTGA GCAGCGGCTC TGCCTCCATG GCCGAGGTCG AAGGCTACAG CGTGGGCGGC
AAGACCGGCA CCGCTGACAA GCCCAAGCCC CGTGGCGGCT ATTACGAAGA CAAGGTGATC
GCGACCTTTG CCGCCGTTTT CCCCACGGAT GCGCCGAAAT ATGTGCTGAT CGTGACCCTG
GATGAACCCG AGATCATCGC CTATGGCGAG GACCGCCGCA CCGCCGGCTG GACCGCCGCG
CCCGTCGCCG CCGAGATGAT CGCGCGCCTT GCGCCGCTCC TTGGGCTCAG ACCACAGATT
GAACCTGCCC GTATCTCTGG TGTAACCCTC ACCTCAAACT AA
|
|---|
| Protein sequence | MIRTPLRPLA RILPARARGE NPDLIERENL AQRHSEMEAR ARTRAEGRLL VLAAFFVCAY
VAIGGRMAMM ATSEPAEPVS VSGSAIANQR ADIVDREGRI LATNFETFSL YAQPPQMVEP
LVAAEKLVSI FPDLDHERLV KDFTGSRKFL WIKKKISPEQ MQAVHDIGDP GLMFGPREMR
LYPNGKLAAH VLGGASFGKE GVNAAEVIGV AGVEKQFDDY LRDPANGGKP LELSLDLSVQ
HATEEVLYGG MKLMNAKGAT SILMDVHTGE VISVASLPDF DPNERPRPPT SGFDPSESPL
FNRAVQGVYE LGSTFKIFAA AQAIELGLVN PETVIDTRGP LRWGKFSIRD FRNYGNEMTV
SRIIEKSSNI GTARLAQQIG AERQRAFLGE LGMLEPTPFE IVEASGGQPL LPRNWSELST
MTISYGHGIS TTPMHLAAGY AAIANGGRLV KPTILKQTGP RLGERVLSKE VAEASLEMLR
RVVSSGSASM AEVEGYSVGG KTGTADKPKP RGGYYEDKVI ATFAAVFPTD APKYVLIVTL
DEPEIIAYGE DRRTAGWTAA PVAAEMIARL APLLGLRPQI EPARISGVTL TSN
|
|---|
| |