| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1977 |
|---|
| Symbol | |
|---|
| ID | 4077161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2081321 |
|---|
| End bp | 2082778 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007292 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_613971 |
|---|
| Protein GI | 99081817 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.911865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.282235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTTG ATATGAACGC ATTACTCGCG ACCTACGATC TGGACGGCGC CAATCAGGCG
CTGCTTCAAA AACGGGCCAA GATGATCCTT GGGCTTTTGC CGGAGGTTCT CGACCACTTT
TATGACCGCG TCGGACGTGA GCCGGAGATG GCCGCGTTTT TTAAGACCGA AGCCATGATG
GAGCGTGCCA AGGGCGAGCA ACTCCAACAC TGGTCGCGCC TGTTTTCGGG CGACTTTGGC
GAGGACTATA TCCAGTCCGC GCGCAACATC GGTCGGGTTC ATACCCGCAT CGGGCTGCCG
TTCTCCTTTT TCAATGCGGG CTATGCCCAT GCCAATGCGC ATATCCAAGC GCTGATACTC
AAGCGCCATT CGGGCGGTTT GATGCGGCGC GCGACCGAAA CACATGCGCT GCTTGGGGTT
CTGTCGCGAG CCATGGCGCT CGATATACAG TTGATCTTCG ACGCCCATGC CGAGGCGATG
CAGGAGGAGC ATACGCGCGG CGTGCGCTAT ATCACCGAGG CGATCGAAGC GCTGGCAGCG
CAGGATCTGA GCCATGAAAT GCCGTCGGCA CAAACTGGCG ATTTCCCATC GGAATTCAAC
GGCGTGCGCG AGAGTCTCAA TGCGGCCTTT GGCGCGCTGC GTCAGGTGAT CCAGGGAATC
CGCAGCACTG CGCAGCAATT GGACACCGGA GCCGCCGAGG TGTCACATGC CTCGCAGGAT
TTGTCCCAAC GCACGGAATC CCAGGCCGCG ACACTTGAGG AAACCACCGC GGCGGTGGAG
GAGATCACTG TCAGCATGCG CGCCTCTGCC GAGGCCACGC AGCAGACCCG AAACGCGGTC
GATACCACTC GCAGACGGGC CGAGGAAGGC AGCGCCGTGG TGCGCAATGC GGTTGAAAAG
ATGAACGAGA TCGCGGACTC CTCAGTCCAG ATTTCCAAGA TCATCTCCAT CATCGATGAC
ATTTCGTTCC AGACCAACCT GTTGGCGCTG AATGCCGGGG TGGAGGCTGC GCGCGCCGGC
GAAAGCGGGC GGGGCTTTGC GGTGGTGGCC TCGGAGGTGC GCAATCTTGC GCAGCGCACG
GCTGATTCCG CCGCCGAAAT CAAAGGGCTG ATCGACATCA GCAACGATCA CGTCGAAAGC
GGCGTCGAAC TGGTCGGCAA TGCGGGTCGG ATGCTGGAGA GCATCGTGCG CCACATCAAG
GAAGCCTCCG AACTGACAGA GCAGGTCGCA AGCGCCGCCG AGCAGCAATC GACCGCTTTT
GGAGAGATCA ATATCGGGAT GTCCCAGCTC GACACGGTGA CCCAGCAAAA TGCCGCGATG
GTAGAACAGA GCACGGCAGC GCTTGTGGAG ATGCGCAACG ACGCCTCTGC GCTCAACGCT
CTGGTTGAAG TGTTTCGGCT GCGGGCAGGG GAGCAAGGGG GCGGCGGACA GGAGATCGCG
CTGCGTGCCG CAAGCTAG
|
|---|
| Protein sequence | MTFDMNALLA TYDLDGANQA LLQKRAKMIL GLLPEVLDHF YDRVGREPEM AAFFKTEAMM
ERAKGEQLQH WSRLFSGDFG EDYIQSARNI GRVHTRIGLP FSFFNAGYAH ANAHIQALIL
KRHSGGLMRR ATETHALLGV LSRAMALDIQ LIFDAHAEAM QEEHTRGVRY ITEAIEALAA
QDLSHEMPSA QTGDFPSEFN GVRESLNAAF GALRQVIQGI RSTAQQLDTG AAEVSHASQD
LSQRTESQAA TLEETTAAVE EITVSMRASA EATQQTRNAV DTTRRRAEEG SAVVRNAVEK
MNEIADSSVQ ISKIISIIDD ISFQTNLLAL NAGVEAARAG ESGRGFAVVA SEVRNLAQRT
ADSAAEIKGL IDISNDHVES GVELVGNAGR MLESIVRHIK EASELTEQVA SAAEQQSTAF
GEINIGMSQL DTVTQQNAAM VEQSTAALVE MRNDASALNA LVEVFRLRAG EQGGGGQEIA
LRAAS
|
|---|
| |