| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1962 |
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| Symbol | |
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| ID | 4077146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2065987 |
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| End bp | 2067360 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638007277 |
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| Product | L-serine ammonia-lyase / 2-hydroxymethylglutarate dehydratase |
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| Protein accession | YP_613956 |
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| Protein GI | 99081802 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.447397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCTCT CCGTTTTTGA CATGTTCAAA GTGGGCATCG GCCCGTCCTC CTCGCACACC
ATGGGCCCGA TGGTGGCCGC GGCACGCTTT CTCGACATGA TGCGGGCCTC GCCCTTTGAC
TTTCACGGGC TGCGCGCATC GCTGCACGGC TCGCTGGCCT TTACCGGCGT CGGCCATGCC
ACCGACCGCG CCACCATTCT CGGGCTTGCT GGCTTTTTGC CCGACACCTA TGACGACGAC
AAAGCCGAGG CCGCGCTTGC GGCGATCACC GAGACCAAGA CCATCGTGCT CGAGGATCTC
GGCACGCTGC GCTTTGACCC CAAGGCGGAT ATGATATTTG ACTATGATCA CGCGCTTCCG
GGCCACGCCA ACGGCATGGT TCTGATGGCG CTGGATGCGC AGGGCGACGT GACCTTGCGG
CAGGTGTTCT ATTCCGTTGG CGGTGGCTTT GTGCTGACCG AGGAAGAGCT GGCACAGGGC
AAGGCCACGG ATGAAGGCGA CCCCGTCCCC TACCCGTTCA AATCCGCCGC CGAGATGCTC
GAGATGGCAA AGACCTCCGG GCTCTCGATC GCCCAGATGA AACGCGCCAA TGAAGTCTCG
CGCGGCTGCG AGCAGAGTTT TGCCAAGGGT ACACAGCGCC TGTGGCAGGT AATGAACGAC
TGTATCAACC GCGGGCTGGA GCGTGACGGC ATCCTGCCCG GCGGTCTGAG CGTGCGCCGC
CGCGCCAAGG GTATCTATGA TGCGCTGATG GCCGAGCGCG GCATGAACCT GACCGCGCCG
CACACCATCA ACGACTGGAT GAGCGTCTAT GCTATGGCCG TGAACGAGGA AAACGCCGCA
GGCGGACAGG TCGTGACGGC CCCCACCAAT GGCGCGGCGG GCGTCCTGCC AGCGGTGCTG
CGCTATTACC TTGATCACGT GCCGGGCGCG TCGGAAAAAC ACATCGAGGA TTTCCTGCTG
ACCGCAGCCG CCATTGGCGG GCTGGTCAAA TACAACGCCT CGATCTCTGG CGCCGAAGCG
GGTTGTCAGG CCGAAGTCGG CTCTGCCTCT GCCATGGCGG CGGCGGGGCT CTGTGCGGTG
ATGGGTGGCA CGCCGGAACA GGTGGAGAAC GCGGCCGAGA TTGCGCTCGA ACACCACCTC
GGCATGACCT GCGACCCGGT CAAAGGGTTG GTTCAGGTGC CCTGCATCGA GCGCAACGGT
CTCGGCGCGA TCAAGGCGGT TTCGGCAGCG TCCCTGGCGC TGCGCGGCGA CGGGCAGCAT
TTTGTGCCGC TGGATGCCGT CATCGAAACC ATGCGCCAGA CCGGGGCCGA CATGCACGAG
AAATACAAGG AAACCTCGCT TGGGGGCCTC GCCGTCAACG TCCCCAACTG CTGA
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| Protein sequence | MFLSVFDMFK VGIGPSSSHT MGPMVAAARF LDMMRASPFD FHGLRASLHG SLAFTGVGHA
TDRATILGLA GFLPDTYDDD KAEAALAAIT ETKTIVLEDL GTLRFDPKAD MIFDYDHALP
GHANGMVLMA LDAQGDVTLR QVFYSVGGGF VLTEEELAQG KATDEGDPVP YPFKSAAEML
EMAKTSGLSI AQMKRANEVS RGCEQSFAKG TQRLWQVMND CINRGLERDG ILPGGLSVRR
RAKGIYDALM AERGMNLTAP HTINDWMSVY AMAVNEENAA GGQVVTAPTN GAAGVLPAVL
RYYLDHVPGA SEKHIEDFLL TAAAIGGLVK YNASISGAEA GCQAEVGSAS AMAAAGLCAV
MGGTPEQVEN AAEIALEHHL GMTCDPVKGL VQVPCIERNG LGAIKAVSAA SLALRGDGQH
FVPLDAVIET MRQTGADMHE KYKETSLGGL AVNVPNC
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