| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1960 |
|---|
| Symbol | |
|---|
| ID | 4077144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2064158 |
|---|
| End bp | 2064946 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007275 |
|---|
| Product | ribose-5-phosphate isomerase A |
|---|
| Protein accession | YP_613954 |
|---|
| Protein GI | 99081800 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.679373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.251131 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG ATCTATCCCC CATCGACAAG GCGAAATTCG TGGCTGCCAA ACGCGCGGCA
GAGCTGGTGG AGGACGGCAT GCGTGTCGGA CTGGGCACCG GGTCCACCGC CGCGTGGCTG
GTGCGGTGTC TTGGCGAAAT GGTGCGCGAG GACGGGCTCA AGATCACCGG CGTGCCGACC
TCTGCCCGTA CCGCCGAGCT GGCGCGCGAG GTCGGGATTG AGCTGATCAC CCTGGATGAG
GCGCGCTGGC TCGACCTCAC GATTGACGGT GCGGATGAAT TCGACAGCGA ACTCAATCTC
ATCAAGGGCG GGGGAGGCGC GCTCTTGCAG GAAAAGATCG TCGCGACGGC CTCCGATCAG
ATGGTGGTGA TCGCCGACAA GGCCAAGGAA GTGGAGACGC TGGGGGCCTT CCCGCTGCCC
ATCGAGGTAA TCCCCTTTGG CTGGCAGACC TCGCAGGCGC TGGTGGAAGA GACGCTGATC
TCGATGGATG TAATGGGGCG CAGCTCGACG TTGCGGATGA ATGGTGCCAG CCCCTATGTG
ACCGACGAGG GCAATCACAT CCTTGATCTG CATCTCAACC GGATCGGCAA TCCGCGCCAG
CTGGCGTTGG TGCTGAACCA GATCCCCGGC GTGGTTGAGA ACGGGCTGTT CATCGACATC
TGCGACACGG TGGTGATCGG CTATGGCGAT GGCAAGGTCG AGGTGCGCGA CATCAACGAG
GGCACTATCG AGACGGACCG GATCGATTTT GTCGAGACCG ACAATCTCTT TGCGGATTTG
AACGACTGA
|
|---|
| Protein sequence | MSGDLSPIDK AKFVAAKRAA ELVEDGMRVG LGTGSTAAWL VRCLGEMVRE DGLKITGVPT
SARTAELARE VGIELITLDE ARWLDLTIDG ADEFDSELNL IKGGGGALLQ EKIVATASDQ
MVVIADKAKE VETLGAFPLP IEVIPFGWQT SQALVEETLI SMDVMGRSST LRMNGASPYV
TDEGNHILDL HLNRIGNPRQ LALVLNQIPG VVENGLFIDI CDTVVIGYGD GKVEVRDINE
GTIETDRIDF VETDNLFADL ND
|
|---|
| |