| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1953 |
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| Symbol | |
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| ID | 4076903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2056616 |
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| End bp | 2058115 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638007268 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_613947 |
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| Protein GI | 99081793 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.100212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0596559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCATCCAA TCTCATCATC CAAGGCAATA GGCCGTGCGC GCGTCCATGA GGGGGCGCAC
AGCGGCTGGC GCTTGTTCTG GATCAGCGTC CTCGGGACCG CGCTGTTGGT CATGCAGTCG
CTTTCGGCGG CGGCCCGTCC CGAAAGCCTC GCGCCACTGG CCGAAAAAGT CAGCCCGGCG
GTGGTCAATA TCACCACGTC GACCGTGGTC GAGGGCCGCA CTGGCCCGCA GGGGATCGTG
CCCGAGGGCT CCCCGTTTGA GGATTTCTTT CGCGAGTTCC AGGACCGCAA CGGCGGCGGC
ACGCGGCCAC GTCGTTCCTC GGCGCTTGGC TCGGGGTTCG TGATCTCGGA AGACGGCTAC
ATCGTCACCA ACAACCATGT GATCGAGGGG GCTGACGAGA TCGAAATCGA GTTCTTCCCC
GGTGAAGGCC AGCCTGCTGA CCTGCTGCCA GCCACTGTTG TTGGCACCGA TCCCAACACC
GATATTGCGC TGTTGAAAGT GGACGCGCCG ATGCCGCTGA GCTTTGTGAA GTTCGGTGAC
AGCGACAAGG CGCGCGTGGG CGACTGGGTT GTCGCCATGG GTAACCCGCT GGGGCAGGGA
TTTTCGCTCT CGGCAGGGAT CGTATCTGCA CGCAACCGGG CGCTTTCGGG CTCTTATGAC
GACTACATTC AGACCGATGC GGCCATCAAC CGTGGCAACT CGGGCGGTCC ACTCTTTAAC
ATGGATGGCG AAGTCGTTGG CGTGAACACC GCAATCCTGT CGCCGAACGG CGGCTCCATC
GGGATCGGCT TCTCCATGGC GTCAAATGTA GTGACCAAAG TGGTGAGCCA GCTCAAGGAG
TTCGGGGAAA CCCGCCGGGG TTGGCTTGGC GTGCGCATTC AGGACGTCAC CGATGATCTG
GCCGAAGCGA TCGGGCTGGC GAGCGACGAA GGTGTGCTGA TCACCGATGT CCCCGAAGGT
CCCGCCAAAG AGGCTGGTCT CCTGGCACGC GACGTCATCA CCAGCTTTGA CGGGTTTGAG
GTGAAAGACA CCCGCGATCT CGTGCGTCGC GTGGGCGACA CCGAAGTCGG CAAGACCGTG
CGTGTCGTGG TGTTCCGCGA TGGCAAAACC GAGACGATCC GCGTCACGCT GGGACGTCGC
GAAGATGCGG TGGGCAACGG CACCGAAGGT GGCGGCGCTG AAGCCGTTCC GGATGAAGGC
GAAAAAGAGC TCCTCGGGCT GACCGTGGGC GTTGTGCGCG ACGACATGCG CGAGGATCTG
AACCTCGATG CGGGCACCAC TGGTCTGGTG ATCCTCTCCG TGGATGAGAC CTCTGGCGCG
TGGGAAAAAG GTCTGCGTGC AGGCGACGTG ATCACTGAGG CAGGCCAGAA CAAGCTCTCT
TCGATTGCCG ATCTCGAAGC GCAGATCGCC GCTGCCGAAG AAGGCGGCCG CAAATCGATC
TTCCTGATGG TGCGCCGTGC TGGTGAGCCG CGCTTTGTCG CGCTCAATCT TGAGGACTGA
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| Protein sequence | MHPISSSKAI GRARVHEGAH SGWRLFWISV LGTALLVMQS LSAAARPESL APLAEKVSPA
VVNITTSTVV EGRTGPQGIV PEGSPFEDFF REFQDRNGGG TRPRRSSALG SGFVISEDGY
IVTNNHVIEG ADEIEIEFFP GEGQPADLLP ATVVGTDPNT DIALLKVDAP MPLSFVKFGD
SDKARVGDWV VAMGNPLGQG FSLSAGIVSA RNRALSGSYD DYIQTDAAIN RGNSGGPLFN
MDGEVVGVNT AILSPNGGSI GIGFSMASNV VTKVVSQLKE FGETRRGWLG VRIQDVTDDL
AEAIGLASDE GVLITDVPEG PAKEAGLLAR DVITSFDGFE VKDTRDLVRR VGDTEVGKTV
RVVVFRDGKT ETIRVTLGRR EDAVGNGTEG GGAEAVPDEG EKELLGLTVG VVRDDMREDL
NLDAGTTGLV ILSVDETSGA WEKGLRAGDV ITEAGQNKLS SIADLEAQIA AAEEGGRKSI
FLMVRRAGEP RFVALNLED
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