| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1948 |
|---|
| Symbol | |
|---|
| ID | 4076898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2051746 |
|---|
| End bp | 2052543 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638007263 |
|---|
| Product | integrins alpha chain |
|---|
| Protein accession | YP_613942 |
|---|
| Protein GI | 99081788 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0825515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATCTG GGGGCAAAGC GCGGCGGCTT CGGGCGCGCG TGTTGCCCCC GATTCTACGC
CGCGCGGCGC AGATTCTGTC TGTGTCGCTG GCGGTGCTGG CGCAGGCGGC ACCCGGCGCC
GCGCGTGAAC ACTGGCGCGT TCTGGGCGCC GAGTTTTCCG AGCCGACCAC CCGCTATGGG
CATGCTGTTC TTGGCGATGA CGTGGAATAC GGCAGCCTGC TGATCCGCCG CGTCGAGACC
GGCAGCACCG CCACTCAGAC GCTGGAGATC AAGCTGCCGC TGACCCATGT CTTTGAGGAT
CTGGAGCCGC GCCTCTGGGA TGTCACCGGA GATGGTCTGC CCGAAGTTGT CGTCATCGAG
ACAGATATGA GTCGGGGTGC GCAATTGGCA GTCTACGATG CCGAGGGCAA TAAGCGCGCC
GCCACCCCTC ATATTGGCCA GCGCAATCGC TGGCTGGCCC CGATCGGGGC GGCGGATCTG
GATGGGGACG GGCACATCGA GATTGCCTAT ATCGACCGCC CACATCTGGC CAAGACCTTG
CGGATCTGGC GCTATGAGGG CCACAATCTG GTGGAGGTCG CCTCTGCCAC GGGGTTGACC
AATCACAAGA TCGGGCAGGA TTTCATCACC TCCGGCCTGC GCGACTGTGG TGCGGGGCCG
GAGCTCATCA CCGTCAGTGC GGGTTGGTCG CGCATCATCA CGTCGCGCCT TGAAGGTGGG
GCCGTGATCT CGCGCGATCT GGGGCCGTTT GATGCGGAAA AAGGGCTTCG CGCCACGCTC
GCCTGCGCGG CCAACTAA
|
|---|
| Protein sequence | MGSGGKARRL RARVLPPILR RAAQILSVSL AVLAQAAPGA AREHWRVLGA EFSEPTTRYG
HAVLGDDVEY GSLLIRRVET GSTATQTLEI KLPLTHVFED LEPRLWDVTG DGLPEVVVIE
TDMSRGAQLA VYDAEGNKRA ATPHIGQRNR WLAPIGAADL DGDGHIEIAY IDRPHLAKTL
RIWRYEGHNL VEVASATGLT NHKIGQDFIT SGLRDCGAGP ELITVSAGWS RIITSRLEGG
AVISRDLGPF DAEKGLRATL ACAAN
|
|---|
| |