| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1905 |
|---|
| Symbol | |
|---|
| ID | 4077402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2007845 |
|---|
| End bp | 2009134 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638007221 |
|---|
| Product | guanine deaminase |
|---|
| Protein accession | YP_613900 |
|---|
| Protein GI | 99081746 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | [TIGR02967] guanine deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG ATCTCATTCT TCTGGGCCGA GTGCTGTCTT TTTGCGCCTC CCCTTTCGCG
CCCGATGGGC CCGAGGCGGC CGTCGAGGAA CACGAAGCCA TTGCCCTGCG CGCGGGCAAG
ATCGTGGCGC TTGGCAGCCG GGCAGCGCTC AGCAAGGTGC TGCCAGAGGC AGAGATCGTC
GATCACGGGC AGAAGCTGAT CGTGCCGGGC TTTGTCGATG CCCATGTGCA TTATCCGCAG
ACCGCGATCA TCGCCAGCTG GGGCAAGCGG CTGATCGACT GGCTCAACAC CTATACCTTT
CCCGAGGAGA TGCGGTTTGG CAACCCGGCC TATGCCGCAG AGATCGCAGC GCGCTACCTG
GATCTGACCA CCGCCTGCGG CACCACGACG GTTGCGAGCT ACTGCACCAT CCATCCCGAG
AGCGTTGATG CGTTGTTCGA GGCGGCGCAG GCCCGCGGGC AGCGCGTGGT GGCCGGCAAG
ACCTGCATGG ACCGCAACGC GCCCGAAGGC CTGCGCGATA CGCCGCAATC CGCCTATGAC
GACAGCGCCG CGCTGATCCA GCGCTGGCAT GGGAGGGAGC GGCTCATCTA TGCGATTACG
CCACGGTTTT CACCAACCTC CACCCCAGAA CAACTCGAAG CGCTCGGCGC ACTCTGGACG
GCGCATCCTA CCTGCCTGAT GCAGACCCAT CTGAGCGAGC AACTGGACGA GATCGAATGG
GTCCGAACCC TCTTTCCCGA GGCGCGCGAC TACCTTGACA CCTACGAGCG CTACGGTCTT
CTGCGCGAAG GCGCGCTCTT TGGCCATGCC ATCCATCTTG AACCCCGCGA ACGCGCCCGC
CTCCTGGAGG CCCGCGCCAG CCTGATCCAC TGCCCCACCT CCAATACCTT CATCGGTTCA
GGGCTTTTTG ACATGAACGG CCTCATGCGC GAGGGCCACC GGATCGGCCT TGCCACCGAC
ACCGGCGGCG GGTCGAGTTT TTCGATGCTG CGTACCATGG CCGCCGCCTA TGAGGTCGCC
CAGCTGCGGG GCACGCCTTT GCACGCGGCA CAGCTCCTGT GGCTTGCAAC CCTCGGGTCG
GCCACGGCAC TTGGGCTTCA GGACAAGGTC GGTAATCTCG CCGTGGGACG GGAGGCCGAC
CTTGTGGTGC TTGATCTTGC CTCGACCCCG GCCATTGCCC AGCGTGCGAC ACGCGCAGAG
ACCCTCTGGG AGGCCCTCTT TCCCACGCTG ATGATGGGCG ATGACCGCGC CATTGCCGAG
GTCCGCATCA ACGGGCAGAA AGCGGTCTAG
|
|---|
| Protein sequence | MKQDLILLGR VLSFCASPFA PDGPEAAVEE HEAIALRAGK IVALGSRAAL SKVLPEAEIV
DHGQKLIVPG FVDAHVHYPQ TAIIASWGKR LIDWLNTYTF PEEMRFGNPA YAAEIAARYL
DLTTACGTTT VASYCTIHPE SVDALFEAAQ ARGQRVVAGK TCMDRNAPEG LRDTPQSAYD
DSAALIQRWH GRERLIYAIT PRFSPTSTPE QLEALGALWT AHPTCLMQTH LSEQLDEIEW
VRTLFPEARD YLDTYERYGL LREGALFGHA IHLEPRERAR LLEARASLIH CPTSNTFIGS
GLFDMNGLMR EGHRIGLATD TGGGSSFSML RTMAAAYEVA QLRGTPLHAA QLLWLATLGS
ATALGLQDKV GNLAVGREAD LVVLDLASTP AIAQRATRAE TLWEALFPTL MMGDDRAIAE
VRINGQKAV
|
|---|
| |