| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1898 |
|---|
| Symbol | |
|---|
| ID | 4077395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1999575 |
|---|
| End bp | 2000039 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007214 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_613893 |
|---|
| Protein GI | 99081739 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3187] Heat shock protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACAA CCCGAAGAGC TTTTATCGCC GCCGTTCTGG TAGCAGCCTC CGCCATCGTG
ATGGGCGCGC AGACCCGCGC GACCGAGCCA GCCACTCCGC CGCTGACCGA TACGCAATGG
ACCCTGAGCG AGATTGAGGG CAAAGCCCCG CTCGAAGGTC GTGATCTCGA CCTCATCTTT
TTTGAGGATG GTCGTTTTGG TACCAGCGCG GGCTGCAACC GGTTCATGGG CGAGGTGGAG
ATCGAAGGCG ATGAAATCAC CTTTCCCGAC AAGATCGCCG GCACCATGAT GGCCTGCCCG
GAGGGCCTTG CAGAACAGGA AGAAAAGCTG CTGTCGCTCC TTTCCGAGGT GACGCATTAC
CAGATCGAGC CAGACGCGCT GATCCTGATG GACAGCGACG GGCAGGCGCT TCTGCGTTAC
AGCCGAGAGG TCGAAGAAGA AGGTCTGGTT GAGACCAGTG GCTGA
|
|---|
| Protein sequence | MMTTRRAFIA AVLVAASAIV MGAQTRATEP ATPPLTDTQW TLSEIEGKAP LEGRDLDLIF
FEDGRFGTSA GCNRFMGEVE IEGDEITFPD KIAGTMMACP EGLAEQEEKL LSLLSEVTHY
QIEPDALILM DSDGQALLRY SREVEEEGLV ETSG
|
|---|
| |