Gene TM1040_1897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1897 
Symbol 
ID4077394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1999008 
End bp1999481 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content59% 
IMG OID638007213 
Producthypothetical protein 
Protein accessionYP_613892 
Protein GI99081738 
COG category[S] Function unknown 
COG ID[COG3236] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR02464] conserved hypothetical protein, ribA/ribD-fused 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCGC CCTCTCCAGA TACGATCTAT TTTTACGCGC AAACGGACCC TTATGCGGAG 
TTTTCAAACT TCGCGCCCTA TGGGGTGTGC TTTGAGGACA TTTGGTGGCC GACGGTGGAA
CACTATTTTC AGGCGATGAA ATTTCACGAT GCAGCCTATC GCACACGCAT TCGCCGGTGC
CAAAAACCCA AGGATGCCAA AGCCCTTGGC ATGACGCGCA AGATCCCCCT GCGTGCCGAC
TGGGAGGAGG TCAAGGATGA CATCATGTAT GCGGCGGTCT TGTGCAAGTT TCGCACCCAT
GGCGCGCCGC GGCAGTTGCT TCTTGGCACC GGCGATGCCC CATTGGTGGA GAACGCGCCT
ATGGATGCCT ATTGGGGCTG CGGCCCGGAT GGGCTGGGTC TCAACAAGCT GGGCCGGATC
CTGATGCGGG TTCGGGGTGA ACTGGCTGAG GATGCGGCGG CGCTGAATCG CTGA
 
Protein sequence
MTPPSPDTIY FYAQTDPYAE FSNFAPYGVC FEDIWWPTVE HYFQAMKFHD AAYRTRIRRC 
QKPKDAKALG MTRKIPLRAD WEEVKDDIMY AAVLCKFRTH GAPRQLLLGT GDAPLVENAP
MDAYWGCGPD GLGLNKLGRI LMRVRGELAE DAAALNR