| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1882 |
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| Symbol | |
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| ID | 4077379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1980763 |
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| End bp | 1982418 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638007198 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_613877 |
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| Protein GI | 99081723 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGG ATTATGTGAT TGTTGGGGCG GGCAGCGCAG GCTGCGCCAT GGCCTACCGT
CTGAGCGAGG CGGGCAAATC GGTGCTGGTG ATCGAGCATG GTGGCACGGA TGCGGGCCCC
TTCATCCAGA TGCCCGGCGC ATTGAGCTAC CCCATGAACA TGTCGATGTA TGACTGGGGT
TACAAATCCC AGCCCGAGCC GCATCTGGGC GGGCGCGAGC TGGTGACGCC GCGCGGCAAG
GTCATTGGCG GATCCTCTTC GATCAACGGC ATGGTCTATG TGCGCGGCCA CGCGGGCGAC
TATAACCACT GGGCCGAAAC GGGCGCGACC GGCTGGTCCT ATGCCGACGT GCTGCCCTAT
TTCAAACGTA TGGAAACCTG GGATGATCGC GGCCATGGCG GCGATCCCGA CTGGCGCGGC
ACCGACGGCC CGCTGCATGT CACCCGTGGC CCCCGCGACA ACCCGCTACA TGATGCCTTT
GTGAAGTCCG GGCAGCAGGC GGGGTATCCG GTCACCAAGG ATTATAACGG CCAGCAGCAA
GAGGGCTTTG GCCCGATGGA GATGACCGTC CACAAGGGCC GCCGCTGGTC TGCCGCCAAT
GCCTATCTGA AACCTGCGCT CAAGCGCGAC AATTGCGATC TGATCCGCGC GCTGGCCCGC
AAGGTGGTGA TCGAGGATGG CCGCGCCGTC GGTGTCGAAG TCGAGCGCGG CGGCAAGATC
GAAGTCATCC GCGCCAATAT CGAGGTGATC CTCGCGGCGT CTTCGCTCAA CTCGCCCAAG
CTCCTGATGC TCTCGGGCAT TGGCCCCGCC GCACATCTGG CCGAACATGG CATCGACGTC
ATCGCGGACC GGCCCGGCGT TGGCCAGAAC CTGCAGGACC ATCTGGAGTT CTATTTCCAG
TTTGCCTCCA AGAAGCCGAT CACGCTCTAT AAATACTGGA ACCTCTTCGG CAAGGCCTTG
GTCGGGGCGC AGTGGCTCTT TACCAAGACC GGGCTCGGGG CCTCGAACCA GTTCGAGAGC
GCGGCCTTCA TTCGCTCGGA CAAGGGGATC GACTATCCCG ACATCCAGTA TCACTTCCTG
CCGATCGCCG TGCGCTATGA CGGGCAGGCG GCGGCCGAGG GCCACGGCTT TCAGGCCCAT
GTCGGCCCGA TGCGCTCGCA GTCGCGCGGC GAGGTAACGC TGGCCAGCGC CGATCCCAAC
GCCGCGCCAA AGATCCTGTT CAACTACATG TCTACCGAGC AGGACTGGAT CGATTTCCGC
AAATGCGTCC GCCTCACGCG TGAGATCTTT GCACAGGATG CGATGAAGCC TTTTGTGAAA
CACGAGATCC AGCCGGGCAC CGACCTGCAA ACGGACGAGG AGATCGACGG ATTCCTGCGC
GAACATGTCG AGAGCGCCTA TCACCCCTGC GGCACCTGCA AGATGGGTGC GGTGGATGAT
CCGATGGCGG TGGTTGACCC CGAATGCCGG GTGATTGGCG TCGAGGGGCT GCGGGTGGCG
GATAGTTCGA TCTTCCCGCG CATCACCAAC GGCAACCTCA ACGGGCCCTC GATCATGACC
GGCGAGAAAG CCTCCGATCA CATTCTGGGG CGCCGTCTGC CTTCGTCGAA TGCCGAGCCG
TGGTTCAACC CGAACTGGCA GACCTCGCAG CGTTGA
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| Protein sequence | MNADYVIVGA GSAGCAMAYR LSEAGKSVLV IEHGGTDAGP FIQMPGALSY PMNMSMYDWG
YKSQPEPHLG GRELVTPRGK VIGGSSSING MVYVRGHAGD YNHWAETGAT GWSYADVLPY
FKRMETWDDR GHGGDPDWRG TDGPLHVTRG PRDNPLHDAF VKSGQQAGYP VTKDYNGQQQ
EGFGPMEMTV HKGRRWSAAN AYLKPALKRD NCDLIRALAR KVVIEDGRAV GVEVERGGKI
EVIRANIEVI LAASSLNSPK LLMLSGIGPA AHLAEHGIDV IADRPGVGQN LQDHLEFYFQ
FASKKPITLY KYWNLFGKAL VGAQWLFTKT GLGASNQFES AAFIRSDKGI DYPDIQYHFL
PIAVRYDGQA AAEGHGFQAH VGPMRSQSRG EVTLASADPN AAPKILFNYM STEQDWIDFR
KCVRLTREIF AQDAMKPFVK HEIQPGTDLQ TDEEIDGFLR EHVESAYHPC GTCKMGAVDD
PMAVVDPECR VIGVEGLRVA DSSIFPRITN GNLNGPSIMT GEKASDHILG RRLPSSNAEP
WFNPNWQTSQ R
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