| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1854 |
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| Symbol | |
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| ID | 4077879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1954506 |
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| End bp | 1956245 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007170 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_613849 |
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| Protein GI | 99081695 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.46631 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGAG CCGCCAAATT GACACCTGAT CCCTATGATG TGCAGCTGCG CGAACTTGGC
CTCGTTCAAC GACAACCCGA CTCCGACATC GACAATCTGA CCCGGCTCGC TGCCCAAGTG
CTGGATGCGC CAACGGCGCT GGTCTCTGTG GTGCAGCGCA GCCTTGATCG TCAATTCTTC
AAAAGCTGCG TGGGCCTGCC CGAGCTGTCG AGCGTGCTGC GTCAGACACC GCTCTCTCAT
TCGTTTTGCC AATTTGTGCA GGACGCCAAC CAGCCTCTGA TCGTGCCCGA TAGCCGCAAT
GACGCCCAGC TGCGTGACAA TGCGGCGGTG ATCGACCTCA AGATGGTTGC CTATCTGGGG
GTGCCGATTC ATTTGCCGGA TGGAACGCCC ATTGGTGCGC TCTGCGTCAT TGATCGCGTG
CCGCGTCAGT GGAGCTCGGA CAATCTCAAG ACCCTGCAAC ACCTTGCGGT GGCCGTCGAC
AATGTCATCG CCCTGAAACA TGCGCGCGAA CTCGCCGCCG AGGCAGAGCG CACTGCCAAA
CGCGAAGCCG AGGCGCGTAA GACCTACCTT GCCCACATGA GCCACGAGAT CCGCACGCCG
CTCAATGGCA TCATCGGCTC GGTCGATCTG TTGCTGCGCG AAGCCTCCCG CGTCAATCTG
GACCCGCGCG AGCAGAACGA TCTGTTGCGC ACCATCAACC GCTCTGCGCG CAACCTTCAG
CATCTGCTGA ATGATGCGCT CGACATTGCC AAGATCGATG CCGGCAAGCT CGAACTGGCC
CCAGCGGCCT TTGACCTGCA TGAAACGGTT GATGACGTGA TGAAGCTGTT CTCGGCCCAG
GCCTGCGAGA AAGGCGTTGA GCTGAACCAC AGCTTTCGCG GCATCGAGGC GCAGGAACAG
CGCTATGGCG ACCGGTTCCG GCTCGCGCAG ATCCTTGGCA ACCTTTTGAG CAACGCCATC
AAATTCACCG ATGACGGAAG CGTATCGCTG CAGATCAATG GCACCCCGGA TGCGCTGCAT
CTCACGCTGC GCGACAGCGG CTGCGGGATT GCGCCGGACC GTCTCGACAA ACTGTTCCTG
CCCTACACCC AAGCCAGTGC CGATGTGGCG CAGACCAAGG GAGGCACGGG CCTTGGTCTG
ACGATCGTGC ACCAGATGGT CGAGCTGATG CAGGGGCGGA TCCGCGCCGA GAGCGTGCCC
GGTCGGGGCA CCGTCTTTCA CCTCTATCTG CCGTTGCCGT TGACCACATC TGCCCCCGAA
GCCGAAAAAG TGCATGACCC GGCAAGGGAT GGGATCGGCG ACACCGCGCC TGTTGCATCT
CCCCCGCCTG CCCCATCCAA TGCGCCCTTG TCCGGCAAAC GGGTGCTCAT CGCCGATGAC
AGCCCGGCCA ACCGGCTGGT GCTGCAAAAG ATGCTCGAGA ACCTCGGCGC GACGGTGGAC
AAGGCCTTTG ACGGTGGCGA TGCCTTCGGT CGGGCGGTGG CGCGGGCCTA TGATGTGTTG
CTGCTGGACA TCCACATGCC GGGCCAGACC GGCACCGAGG TGGTCAAGAA GCTGCGCGCG
GATCCGCGCC ATCAGGCGCA TGACGCGCTG TGTATCGCGG TGACAGGCAG CACCGAAAAG
CAAGAGGTCG AGCATTACCT GGACTCGGGT TTTGATGCCT GGATCGGCAA ACCGCTGCGC
CAATCCGACC TGATGCGGGT GCTGTCGCCG CTGCTTCTCG AACCCCCGTC CCGCGCGTGA
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| Protein sequence | MTRAAKLTPD PYDVQLRELG LVQRQPDSDI DNLTRLAAQV LDAPTALVSV VQRSLDRQFF
KSCVGLPELS SVLRQTPLSH SFCQFVQDAN QPLIVPDSRN DAQLRDNAAV IDLKMVAYLG
VPIHLPDGTP IGALCVIDRV PRQWSSDNLK TLQHLAVAVD NVIALKHARE LAAEAERTAK
REAEARKTYL AHMSHEIRTP LNGIIGSVDL LLREASRVNL DPREQNDLLR TINRSARNLQ
HLLNDALDIA KIDAGKLELA PAAFDLHETV DDVMKLFSAQ ACEKGVELNH SFRGIEAQEQ
RYGDRFRLAQ ILGNLLSNAI KFTDDGSVSL QINGTPDALH LTLRDSGCGI APDRLDKLFL
PYTQASADVA QTKGGTGLGL TIVHQMVELM QGRIRAESVP GRGTVFHLYL PLPLTTSAPE
AEKVHDPARD GIGDTAPVAS PPPAPSNAPL SGKRVLIADD SPANRLVLQK MLENLGATVD
KAFDGGDAFG RAVARAYDVL LLDIHMPGQT GTEVVKKLRA DPRHQAHDAL CIAVTGSTEK
QEVEHYLDSG FDAWIGKPLR QSDLMRVLSP LLLEPPSRA
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