| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1846 |
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| Symbol | |
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| ID | 4077871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1946593 |
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| End bp | 1947876 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007162 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_613841 |
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| Protein GI | 99081687 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.105079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.498084 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCGA CTGCGCCTTT TTCCCGTTTC GAATGGATGA TTGCCTGGCG CTATCTGCGC
GCCCGCCGCA GCGAAGGCGG TGTCTCGGTG ATGACCTGGA TTTCCCTTAT TGGGATCACA
CTGGCGGTCT TTGCGCTGAT CGCCACCCTT GCGGTGCGCT CGGGCTTTCG GTCGGAATTC
GTGGGCACCA TTCTGGGCGC CAATGCCCAT GCCACGGTCT ATGCTCATGG CACGGTCACG
GCGGCTGGCA CGCTGGATCG ACGCATCACC GATTATGCGG CATTGGCTGA GGCAGTGGGG
CAGGTGCCCG GCGTGTTGCA GGCCGCGCCC TTGATCAAGG GGCAGGTGAT GGCCAGCCGG
GGGGATCGCA ACGCCGGCGT GCAGGTCTAT GGCATCCACG CCGAAGACCT GGCCAAAATT
CCGGGTGTTG CCCAAAGCGA CGTGGCCTAT GGCGATCTTG GCCGCTTTGA CGACGGCATC
GCGCTTGGCT CCGGTGTGGC CCGCACGCTG GGCCTTGGGA TCGGGGACAA GGTCAAGCTG
ATCTCACCCA ACGGGGTCAA GACCGCCTTT GGCACCAGCC CGCGCGTGAA TGCCTATGAG
GTGGTCTATG TCTTTACCGC AGGGCGCTAT GACATCGACA ACACCCGCGC CTATCTGCCC
TTTGCCGAGG CGCAGAGCTA TTTCAACCGC GAAGGTGTTG CCGACGAGAT CGAGGTCATG
GTGGCCGATC CCGAAGCTGT CGATCAATAT GTGCTGCCTT TGCTGCAGGC CGCAGGGCAG
GGATATGGCG TCTGGAGCTG GCGCGACAGC TCCGGCGGGT TTCTGCGCGC CCTGGAGGTC
GAGGACAACG TGATGTTCGT GATCCTGTCG ATCCTGGTGC TGATCGCGAC GATGAACATC
GTCTCTGGCC TCATCATGCT GGTGAAAAAC AAGGGCCGGG ACATCGGCAT CCTGCGTACC
ATCGGCCTCA GCGAAGGGTC GGTGATGCGG GTGTTCTTCA TCTGCGGGTC GATCACCGGC
GTGATCGGCA CCGTGCTGGG CGTGATCCTC GGCTGCCTTT TTGCGATATA TATCGACCCG
ATCTTTTCTT TTGTGAACTA TGTGATGGGC GGCGGGGTCT GGGATCCGTC GATCCGGGGC
ATCTATGCAC TGCCTGCGGA ACTGCGCGCA GGCGATGTGA TCTCGGCCGT GAGTCTGTCG
CTGGGCTTGT CGTTTGTCGT GACCATCTTC CCGGCCCGAC GTGCGGCACG GCTCAACCCG
GTGGAGGCGC TGCGCTATGA GTGA
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| Protein sequence | MAATAPFSRF EWMIAWRYLR ARRSEGGVSV MTWISLIGIT LAVFALIATL AVRSGFRSEF
VGTILGANAH ATVYAHGTVT AAGTLDRRIT DYAALAEAVG QVPGVLQAAP LIKGQVMASR
GDRNAGVQVY GIHAEDLAKI PGVAQSDVAY GDLGRFDDGI ALGSGVARTL GLGIGDKVKL
ISPNGVKTAF GTSPRVNAYE VVYVFTAGRY DIDNTRAYLP FAEAQSYFNR EGVADEIEVM
VADPEAVDQY VLPLLQAAGQ GYGVWSWRDS SGGFLRALEV EDNVMFVILS ILVLIATMNI
VSGLIMLVKN KGRDIGILRT IGLSEGSVMR VFFICGSITG VIGTVLGVIL GCLFAIYIDP
IFSFVNYVMG GGVWDPSIRG IYALPAELRA GDVISAVSLS LGLSFVVTIF PARRAARLNP
VEALRYE
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