| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1834 |
|---|
| Symbol | |
|---|
| ID | 4076980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1931935 |
|---|
| End bp | 1934538 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007149 |
|---|
| Product | RTX toxins and related Ca2+-binding proteins-like |
|---|
| Protein accession | YP_613829 |
|---|
| Protein GI | 99081675 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.738226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACGA TTTACGATTC TTTTGCCGAC ACCCCAGGCA GCGCCGTGCG CCTGGACGTA
GGCAGCCCGT ATGAAGTCAG ACTGACCCAG GCCGAGCTTG ATGCGGCGGC CACGTTCGGC
AACCCCGAAT ACGACTACTT CGAGTTTTAC GCGGACCCCT TCACGACCTA CACGGTCCAA
GTGATCGCGG CAAATGACGC CATCGATCAA TCCCTCTGGC TGCCCTCCCC GACTTGGCCG
GGCTATAATA CCGAGTTCGG ATTCTCCGCC CCCGACGGTA CGATGGTGAC GCTCGAGGAC
GGGTATTCGG TGCGCAACTG GGATCCTGGC GACAGGCTCA TCACCACTCT TTATGATGGC
GGGCTGGTCC GCATGGCGGT GCGATTTGAC GGCTGGTTGC AGGAATATCG GACCGGCGAG
GACCTGTCCG ACCTGCCCGG CTCTGACCGC AGTTTCTTTA TCCGCATCGT CGAAGGCGAT
GTCGCCGGAA CGCAGCCGCA GATCGACACC GTCGGCACGG GACCAGACGC CCTGGAGGTT
TCGCCAGAAG ACGCCTCCGG GATCATCACC GGAGAGCTGG AGGATCTCGA AGGTACGCCG
GACGTCGACG AGTATCTGTT CACCCTGCGC GCAGGTTTCC ATTACGATGT GGTGGTGCGT
GGCGCCACCG GCGCACAATC CGGCGAAAGC CCGGGGGTGT TCAGGGTCAC CGTCAGCGAG
GAAAATGGCG CAAGCTCCTG GACGCTTGAA TCGGATGTCG ACCGCATGTC GACCGGCGAT
GTGGAGCAGA CGATCACCTC TGTGCGCATC GGAGATGGGT TTGGCAGCCT TCTCCTCGAG
CCGGGCGAAG AGATCGACGT GCGCGTTTCA ATCCAAAGCA TCTATGACCC CAATCGCGAA
GTCAGCCCCT ACCAAACCGG TGGATATTCC GTCGGCGGAT ATGAGATCGA GATCCTTCCG
ACCGATGACG ATCACGGCAA CAACCGTCTC ACGCCAAGCA CGATCTCCGT TGGGGGCTGG
CAGTCGGGCA CTCTGAACCC CTATTACGAG ATCAGCGCCG CCGAACCCTT TGGCGATCGC
GACTGGATGG AAATCGTCGG CGGTGTCGAA GAGGGGCGCT ACTATGTTGC CAGCTTCGAC
TACAGCGATG GCCGCCCCTT CTCGATGTTC GCTAGCTTTC ATAACTCGGT GTCCACCGAG
ACCGTGCGGG CCCCCGATTA TGCGATCTGG CAGCCGAACT ACACCGGCGC AGCCTGGCTC
GAAGTGGACT CGAACTTCAT CGGGTCGGCG GACTGGCGGG TCAGTCTCGG TAGCTATGAA
ACCCTGGAAC TCGGCAACCG CTCAGACGAG AGACTGACCG GCACCGCAGG CGAAAACTTC
CTTGATGGGC GCGGCGGCGC AGATCTCATT GTGGGACGGG GGGGCGCGGA CCAGCTCATT
GGCAATGGTG GCAATGATAC CATCAAAGGC GGCGGCGGGC ATGACATCCT GAGCGGTGGC
GCCGGCAAGG ATGTGCTCAA AGGCAATGGC GGCAACGACG CGCTGAACGG CGGCGGCGGG
CGTGACAAGC TCATCGGCGG ACGCGGAAAT GATACCATGT CCGGGGGCGA TGTCAGAGAC
GTGCTCAAAG GCGGCGGCGG CAATGACGTC CTGGACGGTG GTGAAGGCCG CGACAAACTG
ATCGGCGGCA GTGGCAACGA TACGATCACC ACGGGCTTTG ATGGCGATGT GGTCAGGGCC
GGAAGCGGCA TCGACACGAT CATCATCGCA GGCCCCGAGG GTGACCGGGA TCTGCGCATC
CGCGGCACGA TGGACGACGG GGATATCCTC GATCTCTCCG CGCTGAATAT CGACAGCTAT
TTCGTCGAGG ACAGTTTTGC GGGCGGTGGC GCATCCTCCG TCCGCACGCG CGGGGATGGC
TTGGGCTATG ACATCGACTT TGACGGGGAC GGCATCGGCG ATCGCTCGAT CTTCTTTGAC
AGCAGCGAAG ATGCGGATCT CGTCGATCTC GAAGGTGTCG CAGTCCGGAC CCCCGCAACC
TACTACGAAT ACCTCGCCGA GACCCTGACG CCGCTGGAGT GGACGCCGAC ACGGGAACGC
TACGTTTTGG ATTCCTACGG CACATTCCAG TACGATCTGA TCTCTGGCAC CTCCGGCGCC
GACCTCATCA GCAACGACGG ACGTGCGGAC AACTACTTGT ACAGGGGACA GGTCCGCGCC
GGTGCCGGTG ATGACATCAT CGACATGCAA CTGCATTCCA GCCTCACCTA CTACGGAGGG
ACCGGAGACG ACTATTTCGT GTGGCAGCCT CCCGTCGACC CGAATTATGC GCTCTGGATC
CGGCTCAATG ATTTCAGGCA ATACGGCGAA GAGGATTATA TCGTCGTGCG GTCGGACATC
TGGGGCGAAG GTGTGAGCAT CGACAATATC ACCTTTGACC GCATGCGCAG CGATGGCGAC
TACCTCGAGG CCCATATCGT CGGGACCAAC GGTCTGGAAG GCACGATCTC CGTGACACAG
CCTTTTCGGT CTTCGGACCC GCTGCGCAAC AATGATGCAA CCTCCGCCGA TTTCCTCAAT
GTGGACGCCT TCATCTTTGT CTGA
|
|---|
| Protein sequence | MPTIYDSFAD TPGSAVRLDV GSPYEVRLTQ AELDAAATFG NPEYDYFEFY ADPFTTYTVQ
VIAANDAIDQ SLWLPSPTWP GYNTEFGFSA PDGTMVTLED GYSVRNWDPG DRLITTLYDG
GLVRMAVRFD GWLQEYRTGE DLSDLPGSDR SFFIRIVEGD VAGTQPQIDT VGTGPDALEV
SPEDASGIIT GELEDLEGTP DVDEYLFTLR AGFHYDVVVR GATGAQSGES PGVFRVTVSE
ENGASSWTLE SDVDRMSTGD VEQTITSVRI GDGFGSLLLE PGEEIDVRVS IQSIYDPNRE
VSPYQTGGYS VGGYEIEILP TDDDHGNNRL TPSTISVGGW QSGTLNPYYE ISAAEPFGDR
DWMEIVGGVE EGRYYVASFD YSDGRPFSMF ASFHNSVSTE TVRAPDYAIW QPNYTGAAWL
EVDSNFIGSA DWRVSLGSYE TLELGNRSDE RLTGTAGENF LDGRGGADLI VGRGGADQLI
GNGGNDTIKG GGGHDILSGG AGKDVLKGNG GNDALNGGGG RDKLIGGRGN DTMSGGDVRD
VLKGGGGNDV LDGGEGRDKL IGGSGNDTIT TGFDGDVVRA GSGIDTIIIA GPEGDRDLRI
RGTMDDGDIL DLSALNIDSY FVEDSFAGGG ASSVRTRGDG LGYDIDFDGD GIGDRSIFFD
SSEDADLVDL EGVAVRTPAT YYEYLAETLT PLEWTPTRER YVLDSYGTFQ YDLISGTSGA
DLISNDGRAD NYLYRGQVRA GAGDDIIDMQ LHSSLTYYGG TGDDYFVWQP PVDPNYALWI
RLNDFRQYGE EDYIVVRSDI WGEGVSIDNI TFDRMRSDGD YLEAHIVGTN GLEGTISVTQ
PFRSSDPLRN NDATSADFLN VDAFIFV
|
|---|
| |