Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1834 |
Symbol | |
ID | 4076980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1931935 |
End bp | 1934538 |
Gene Length | 2604 bp |
Protein Length | 867 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638007149 |
Product | RTX toxins and related Ca2+-binding proteins-like |
Protein accession | YP_613829 |
Protein GI | 99081675 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.738226 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTACGA TTTACGATTC TTTTGCCGAC ACCCCAGGCA GCGCCGTGCG CCTGGACGTA GGCAGCCCGT ATGAAGTCAG ACTGACCCAG GCCGAGCTTG ATGCGGCGGC CACGTTCGGC AACCCCGAAT ACGACTACTT CGAGTTTTAC GCGGACCCCT TCACGACCTA CACGGTCCAA GTGATCGCGG CAAATGACGC CATCGATCAA TCCCTCTGGC TGCCCTCCCC GACTTGGCCG GGCTATAATA CCGAGTTCGG ATTCTCCGCC CCCGACGGTA CGATGGTGAC GCTCGAGGAC GGGTATTCGG TGCGCAACTG GGATCCTGGC GACAGGCTCA TCACCACTCT TTATGATGGC GGGCTGGTCC GCATGGCGGT GCGATTTGAC GGCTGGTTGC AGGAATATCG GACCGGCGAG GACCTGTCCG ACCTGCCCGG CTCTGACCGC AGTTTCTTTA TCCGCATCGT CGAAGGCGAT GTCGCCGGAA CGCAGCCGCA GATCGACACC GTCGGCACGG GACCAGACGC CCTGGAGGTT TCGCCAGAAG ACGCCTCCGG GATCATCACC GGAGAGCTGG AGGATCTCGA AGGTACGCCG GACGTCGACG AGTATCTGTT CACCCTGCGC GCAGGTTTCC ATTACGATGT GGTGGTGCGT GGCGCCACCG GCGCACAATC CGGCGAAAGC CCGGGGGTGT TCAGGGTCAC CGTCAGCGAG GAAAATGGCG CAAGCTCCTG GACGCTTGAA TCGGATGTCG ACCGCATGTC GACCGGCGAT GTGGAGCAGA CGATCACCTC TGTGCGCATC GGAGATGGGT TTGGCAGCCT TCTCCTCGAG CCGGGCGAAG AGATCGACGT GCGCGTTTCA ATCCAAAGCA TCTATGACCC CAATCGCGAA GTCAGCCCCT ACCAAACCGG TGGATATTCC GTCGGCGGAT ATGAGATCGA GATCCTTCCG ACCGATGACG ATCACGGCAA CAACCGTCTC ACGCCAAGCA CGATCTCCGT TGGGGGCTGG CAGTCGGGCA CTCTGAACCC CTATTACGAG ATCAGCGCCG CCGAACCCTT TGGCGATCGC GACTGGATGG AAATCGTCGG CGGTGTCGAA GAGGGGCGCT ACTATGTTGC CAGCTTCGAC TACAGCGATG GCCGCCCCTT CTCGATGTTC GCTAGCTTTC ATAACTCGGT GTCCACCGAG ACCGTGCGGG CCCCCGATTA TGCGATCTGG CAGCCGAACT ACACCGGCGC AGCCTGGCTC GAAGTGGACT CGAACTTCAT CGGGTCGGCG GACTGGCGGG TCAGTCTCGG TAGCTATGAA ACCCTGGAAC TCGGCAACCG CTCAGACGAG AGACTGACCG GCACCGCAGG CGAAAACTTC CTTGATGGGC GCGGCGGCGC AGATCTCATT GTGGGACGGG GGGGCGCGGA CCAGCTCATT GGCAATGGTG GCAATGATAC CATCAAAGGC GGCGGCGGGC ATGACATCCT GAGCGGTGGC GCCGGCAAGG ATGTGCTCAA AGGCAATGGC GGCAACGACG CGCTGAACGG CGGCGGCGGG CGTGACAAGC TCATCGGCGG ACGCGGAAAT GATACCATGT CCGGGGGCGA TGTCAGAGAC GTGCTCAAAG GCGGCGGCGG CAATGACGTC CTGGACGGTG GTGAAGGCCG CGACAAACTG ATCGGCGGCA GTGGCAACGA TACGATCACC ACGGGCTTTG ATGGCGATGT GGTCAGGGCC GGAAGCGGCA TCGACACGAT CATCATCGCA GGCCCCGAGG GTGACCGGGA TCTGCGCATC CGCGGCACGA TGGACGACGG GGATATCCTC GATCTCTCCG CGCTGAATAT CGACAGCTAT TTCGTCGAGG ACAGTTTTGC GGGCGGTGGC GCATCCTCCG TCCGCACGCG CGGGGATGGC TTGGGCTATG ACATCGACTT TGACGGGGAC GGCATCGGCG ATCGCTCGAT CTTCTTTGAC AGCAGCGAAG ATGCGGATCT CGTCGATCTC GAAGGTGTCG CAGTCCGGAC CCCCGCAACC TACTACGAAT ACCTCGCCGA GACCCTGACG CCGCTGGAGT GGACGCCGAC ACGGGAACGC TACGTTTTGG ATTCCTACGG CACATTCCAG TACGATCTGA TCTCTGGCAC CTCCGGCGCC GACCTCATCA GCAACGACGG ACGTGCGGAC AACTACTTGT ACAGGGGACA GGTCCGCGCC GGTGCCGGTG ATGACATCAT CGACATGCAA CTGCATTCCA GCCTCACCTA CTACGGAGGG ACCGGAGACG ACTATTTCGT GTGGCAGCCT CCCGTCGACC CGAATTATGC GCTCTGGATC CGGCTCAATG ATTTCAGGCA ATACGGCGAA GAGGATTATA TCGTCGTGCG GTCGGACATC TGGGGCGAAG GTGTGAGCAT CGACAATATC ACCTTTGACC GCATGCGCAG CGATGGCGAC TACCTCGAGG CCCATATCGT CGGGACCAAC GGTCTGGAAG GCACGATCTC CGTGACACAG CCTTTTCGGT CTTCGGACCC GCTGCGCAAC AATGATGCAA CCTCCGCCGA TTTCCTCAAT GTGGACGCCT TCATCTTTGT CTGA
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Protein sequence | MPTIYDSFAD TPGSAVRLDV GSPYEVRLTQ AELDAAATFG NPEYDYFEFY ADPFTTYTVQ VIAANDAIDQ SLWLPSPTWP GYNTEFGFSA PDGTMVTLED GYSVRNWDPG DRLITTLYDG GLVRMAVRFD GWLQEYRTGE DLSDLPGSDR SFFIRIVEGD VAGTQPQIDT VGTGPDALEV SPEDASGIIT GELEDLEGTP DVDEYLFTLR AGFHYDVVVR GATGAQSGES PGVFRVTVSE ENGASSWTLE SDVDRMSTGD VEQTITSVRI GDGFGSLLLE PGEEIDVRVS IQSIYDPNRE VSPYQTGGYS VGGYEIEILP TDDDHGNNRL TPSTISVGGW QSGTLNPYYE ISAAEPFGDR DWMEIVGGVE EGRYYVASFD YSDGRPFSMF ASFHNSVSTE TVRAPDYAIW QPNYTGAAWL EVDSNFIGSA DWRVSLGSYE TLELGNRSDE RLTGTAGENF LDGRGGADLI VGRGGADQLI GNGGNDTIKG GGGHDILSGG AGKDVLKGNG GNDALNGGGG RDKLIGGRGN DTMSGGDVRD VLKGGGGNDV LDGGEGRDKL IGGSGNDTIT TGFDGDVVRA GSGIDTIIIA GPEGDRDLRI RGTMDDGDIL DLSALNIDSY FVEDSFAGGG ASSVRTRGDG LGYDIDFDGD GIGDRSIFFD SSEDADLVDL EGVAVRTPAT YYEYLAETLT PLEWTPTRER YVLDSYGTFQ YDLISGTSGA DLISNDGRAD NYLYRGQVRA GAGDDIIDMQ LHSSLTYYGG TGDDYFVWQP PVDPNYALWI RLNDFRQYGE EDYIVVRSDI WGEGVSIDNI TFDRMRSDGD YLEAHIVGTN GLEGTISVTQ PFRSSDPLRN NDATSADFLN VDAFIFV
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