| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1828 |
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| Symbol | |
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| ID | 4076974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1923997 |
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| End bp | 1925799 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638007143 |
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| Product | ABC transporter, ATP-binding/permease protein |
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| Protein accession | YP_613823 |
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| Protein GI | 99081669 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.924491 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGAG GTGCAGTGCA GAATACGGCC AGCAACGAGG AACGCGAGAC CTCGCGCAGG
ATCGGAGTCC TGAAGGCGCT TTGGCCGTTC ATGCGTCCGT ATCGTGGCTT GATCTTTGCC
GCGCTGGCTG CGCTCACCCT GACGGCAGGC GTGTCGCTGT CGCTGCCGCT GGCGGTGCGC
CGGGTGGTGG ACAACTTCCG CATCACCGAT GCCGCATTGC TGAACCAGTA TTTTACGGCT
GCGATGATCA TGGCGGCGCT GCTCGCGCTG GGCACGGGGA TACGCTATGC GCTGGTGACC
AAGCTGGGCG AGCGGGTGGT GGCCGATATC CGCAAGGCGG TGTTTGACCG CATCATCGGC
ATGAGCCCCG CGTTTTTCGA GCGTATCATG ACGGGCGAGG TGCTGAGCCG GATCACCACC
GATACCACGC TCATTCAGTC GGTGCTTGGG TCTTCTGCAT CCATTGCGCT GCGCAACCTG
TTGATTTTCC TCGGTGGTCT GGTGCTGATG CTGCTCACCT CGGCCAAGCT CACGGCGATG
GTTCTGCTGA TCGTGCCGGC GGTGATCGTG CCGATCCTGT TTCTGGGGCG GCGTCTGCGG
GTGATCTCGC GGGAGAACCA GGACTGGATC GCGGCCTCGT CGGGGAATGC GGGCGAGTCG
CTGGGCGCGG TGCAGACCGT GCAGGCCTTT ACCCATGAGG ACCTGAGCCG GGCGCATTTT
TCCGAGATGA CAGAAACCTC CTATGAGGTC TCCAAGCGGC GCATCCAGAC CCGCGCATTG
CTGACGGTGA TCGTGATCTT TCTGGTGTTT TCGGGCGTTG TTGGCGTCTT GTGGATCGGG
GCCAACGACG TGCGCTTTGG CTCCATGAGC GAAGGCGCTC TGGTGCAGTT CGTGATCTAT
GCCGTGATGG TGGCGGGCTC CGTGGCGGCG CTCTCGGAGA TCTGGAGCGA GTTGCAGCGT
GCCGCAGGCG CGACGGAGCG GCTGGTGGAG CTGTTGCAGG CCGAGGACAG CGTGCGCGAC
CCTGAGGTGG CGCAGGTGCT GCCAGAGCCT GTGCGCGGTG AGCTGACTTT TGACACCGTG
TCCTTCACCT ATCCCTCGCG GCCGGACGTC TCGGCGCTGG ATCAGGTGAG CCTCACCATC
GCGCCGGGCG AGACCGTGGC CTTTGTCGGC CCGTCGGGGG CGGGCAAGAC CACGATCATT
CAGATGATCC AGCGGTTCTA CGATCCGCAA TCGGGCGAGG TGCGTCTGGA CGGTGTGCCG
CTGCAGGCGC TGGCGCGCGA TGATTTCCGC CGCCACATCG CGCTGGTGCC GCAAGATCCG
GTGATCTTTG CTGCCACCGC GCGCGACAAT ATCCGTTTTG GCCGTCCCGA TGCGAGCGAC
GCCGAGGTCG AGGCCGCCGC CAAGGCCGCT GCCGCGCATG ACTTCATCAT GAAGCTGCCC
GAAGGCTATG ATGCCTATGT GGGCGAGCGC GGGGTGATGC TGTCGGGCGG GCAGAAACAG
CGCATTGCGA TTGCGCGGGC GATCCTGCGC GACGCGCCTG TGCTGCTTCT GGATGAGGCG
ACCTCGGCGC TGGATGCCGA GAGCGAGCGT CTGGTGCAGG CCGCGTTTGA GGACCTGAGC
CGGGATCGCA CCACCATTGT GGTGGCGCAC CGTCTGGCGA CGGTCAAAAA GGCCGACCGG
ATCGTGGTGA TGGATCAGGG CCGCATTGTT GCGGTGGGCA CCCATGAGAG CCTGGTGGCC
GAGGGCGGGC TTTATGCGCG CCTCGCGCGG CTGCAGTTCA CCGACGGGCA GGCGCAGGGG
TAA
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| Protein sequence | MARGAVQNTA SNEERETSRR IGVLKALWPF MRPYRGLIFA ALAALTLTAG VSLSLPLAVR
RVVDNFRITD AALLNQYFTA AMIMAALLAL GTGIRYALVT KLGERVVADI RKAVFDRIIG
MSPAFFERIM TGEVLSRITT DTTLIQSVLG SSASIALRNL LIFLGGLVLM LLTSAKLTAM
VLLIVPAVIV PILFLGRRLR VISRENQDWI AASSGNAGES LGAVQTVQAF THEDLSRAHF
SEMTETSYEV SKRRIQTRAL LTVIVIFLVF SGVVGVLWIG ANDVRFGSMS EGALVQFVIY
AVMVAGSVAA LSEIWSELQR AAGATERLVE LLQAEDSVRD PEVAQVLPEP VRGELTFDTV
SFTYPSRPDV SALDQVSLTI APGETVAFVG PSGAGKTTII QMIQRFYDPQ SGEVRLDGVP
LQALARDDFR RHIALVPQDP VIFAATARDN IRFGRPDASD AEVEAAAKAA AAHDFIMKLP
EGYDAYVGER GVMLSGGQKQ RIAIARAILR DAPVLLLDEA TSALDAESER LVQAAFEDLS
RDRTTIVVAH RLATVKKADR IVVMDQGRIV AVGTHESLVA EGGLYARLAR LQFTDGQAQG
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