| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1822 |
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| Symbol | |
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| ID | 4076968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1916613 |
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| End bp | 1917428 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007137 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_613817 |
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| Protein GI | 99081663 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.112929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.720106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATA TCCCCGTATC CGCTCTGATC GGGCTGTTTT TCACGGCCCT CTACTTTCTC
GGCGCACTTT TTGCGCCGCT CCTGGCCCCC TATGGCATGG CCGAAGTGGT CGGCGACGTT
TGGGAACCCT CCAGCGCCGA CTACTGGCTG GGCACCGACA ATATCGGACG CGATCTGTTG
TCGCGGATGA TCTATGGCGG GCGCACCACC ATCTTCATCG CCACCATGGC GACGCTGATC
TCCTTCACCA CCGGATCCAT CCTCGGGATC TTTGCAGCCG TCTCCGGCGG GTGGATCGAC
CAGACACTGT CGCGCTTTGT CGATCTCATC ATGTCGATCC CGACACTGAT CTTTGCGCTT
GTTGTGCTCT CGGTGACGCC TGTGACCGTG CCGATGCTGA TCCTCGTGAT GGGTCTTTTG
GACTCCACAC GCGTGTTCCG CCTCGCCCGC GCCGTTGCTG TCGACATCGA GGTGATGGAC
TTTGTGGAAG CCGCACGCCT GCGCGGTGAG AAGACCGCGT GGATCATCTT CCGCGAGATC
CTGCCCAATG CGCTGTCGCC ACTGGTGGCA GAGATGGGGC TGCGCTTCAT CTTTATGGTG
CTCTTTGTGT CCACCCTCTC CTTCCTGGGT CTGGGCGTGC AGCCCCCCGA GGCTGATTGG
GGCGGCATCG TGAAGGAAAA CAAGGACGGT ATCGTCTATG GCGTGCCCGC CGCGCTGATC
CCCGCCTTTG CCATCGCAAC CCTTGCGATC TCGGTGAACC TGGTGGCGGA CTGGATCCTG
AACCGTACCA CATCGCTGAA AGGAGGCCGG GGATGA
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| Protein sequence | MKNIPVSALI GLFFTALYFL GALFAPLLAP YGMAEVVGDV WEPSSADYWL GTDNIGRDLL
SRMIYGGRTT IFIATMATLI SFTTGSILGI FAAVSGGWID QTLSRFVDLI MSIPTLIFAL
VVLSVTPVTV PMLILVMGLL DSTRVFRLAR AVAVDIEVMD FVEAARLRGE KTAWIIFREI
LPNALSPLVA EMGLRFIFMV LFVSTLSFLG LGVQPPEADW GGIVKENKDG IVYGVPAALI
PAFAIATLAI SVNLVADWIL NRTTSLKGGR G
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