| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1821 |
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| Symbol | |
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| ID | 4076967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1915660 |
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| End bp | 1916616 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007136 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_613816 |
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| Protein GI | 99081662 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.054126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.742084 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGG TGATCAAACT ATTGGCTCAG CGCATTGCGC TGAGTCTCTT CCTGCTGTTG
ATGATCTCGG CGCTGATCTT TGCGGGCACC ATGATCCTGC CCGGCGACGT CGCCCAGTCC
ATCCTCGGCC AATCCGCAAC CCCCGAGGCG CTCGCCAACC TGCGCGCCGA GCTTGGACTG
AACGAACCCG CCCTCACGCG CTATTTCGAC TGGCTTTTTG GTGCCTTGCA AGGCGATCTT
GGCACCGCTC TGACCTCTGG TCAGGACATC ACTTCCGCCA TTGGATCGCG CCTCTCGAAC
ACGCTGTTCC TTGCGTTCTG GGCCGCTGTG ATCGCCGTGC CGCTGGCGAT TTTCCTCGGT
CTTCTGGCCG TGCGCTACAA AGATCGCTGG CCGGACAAGC TGATTTCCGG CGTCACATTG
GCGTCGATCT CCATTCCTGA ATTCCTGATC GGTTACGTTC TGATGTATCT GATCGCCGTA
AAACTGCGCT GGTTTCCCTC TGTCGCCATG ATCAACGACG GCATGAACCT GTGGCAGAAG
CTCAATTCCA TCGCCCTGCC CGTCGCGGTG CTGACGCTTG TGGTGCTTGC CCACATGATG
CGCATGACCC GTGCGGCGAT CCTCAACGTG ATGCAGTCCG CCTATATCGA GACTGCGGAA
CTCAAGGGGC TTTCGACCTT CAAGGTGATC TGGCGTCATG CCTTCCCCAA CTCGATCGCG
CCGATCGTGA ATGTGGTGAT GCTGAACCTC GCCTATCTTG TGGTTGGTGT CGTGGTGATC
GAAGTGGTCT TCGTCTATCC CGGCATGGGG CAATATCTGG TGGATCATGT CTCCAAACGT
GACGTGCCGG TGGTGCAGGC CTGTGGTCTG ATCTTTGCCA CCGTCTATAT CGGCCTCAAC
ATGGTTGCCG ATATCGTGTC GATCCTGTCG AACCCGCGTC TGAGGCATCC GAAATGA
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| Protein sequence | MNPVIKLLAQ RIALSLFLLL MISALIFAGT MILPGDVAQS ILGQSATPEA LANLRAELGL
NEPALTRYFD WLFGALQGDL GTALTSGQDI TSAIGSRLSN TLFLAFWAAV IAVPLAIFLG
LLAVRYKDRW PDKLISGVTL ASISIPEFLI GYVLMYLIAV KLRWFPSVAM INDGMNLWQK
LNSIALPVAV LTLVVLAHMM RMTRAAILNV MQSAYIETAE LKGLSTFKVI WRHAFPNSIA
PIVNVVMLNL AYLVVGVVVI EVVFVYPGMG QYLVDHVSKR DVPVVQACGL IFATVYIGLN
MVADIVSILS NPRLRHPK
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