| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1813 |
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| Symbol | |
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| ID | 4076959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1905025 |
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| End bp | 1906029 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007128 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_613808 |
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| Protein GI | 99081654 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.24254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTT TGACCGCTGC CGCAACCGCA CTGGCTCTGA GCGTGACCGC AGGTGTGGCG
CAGGCCGATG CCTGTGATGA TGGCGAAATC GTCGTCAAGT TCAGCCACGT TACCAACACC
GACAAGCACC CCAAGGGGAT CGCGGCGTCC TTGCTGGAAA AGCGTGTAAA CGAAGAGATG
AACGGCACCA TGTGCATGGT CGTCTATCCG AACTCCACGC TGTATGACGA CAACAAGGTT
CTCGAAGCGA TGCTGCAGGG CGACGTGCAG CTGGCGGCGC CTTCGCTGTC GAAATTCGAG
AAGTTCACCA AGCAGTTCCG CCTGTTTGAC CTGCCGTTCA TGTTCAAGAA CATCGACGCC
GTGGACGCAT TCCAGGCTTC TGAAAATGGT CAGGCCATGC TCGACAGCAT GCAGCGCCGC
GGCCTGCAGG GTCTTGGCTA CTGGCACAAC GGCATGAAGC AGATGTCTGC CAACAAGCCG
CTCGTGATGC CCGAAGACGC CAATGGCCTG AAGTTCCGCG TGCAGTCTTC GGACGTGCTG
GTGGCGCAGA TGGAAGCGAT CGGTGGCAGC CCGCAGAAAA TGGCCTTCTC CGAAGTCTAT
GGCGCGCTGC AGCAGGGCGT TGTGGATGGC CAGGAGAACA CCTGGTCCAA CATCTACGGC
AAGAAGTTCT TTGAAGTTCA GGACGGTATC ACAGAAACCA ACCACGGCGT GCTCGACTAT
CTGGTTGTGG CTTCGGTGGA CTGGCTCGAC AGCCTTGAGC CTGAGGTGCG TGACCAGTTC
ATGACCATCA TGACCGAAGT GACCGCAACC CGGAACGCCG AATCCACCCG CGTCAACAAC
GAAGCCAAAG AGGCCATCGT TGCGGCAGGT GGCGAAGTGC GCCAGCTTAC CGCTGAGCAG
CGTCAGGCTT GGGTCGACGT GATGAAGCCC GTCTGGGAGC AGTTCTCCGG TGACGTGGGT
CAGGACATGA TCGACGCTGC ACAGTCGATC AACGCCGGCT TCTAA
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| Protein sequence | MKFLTAAATA LALSVTAGVA QADACDDGEI VVKFSHVTNT DKHPKGIAAS LLEKRVNEEM
NGTMCMVVYP NSTLYDDNKV LEAMLQGDVQ LAAPSLSKFE KFTKQFRLFD LPFMFKNIDA
VDAFQASENG QAMLDSMQRR GLQGLGYWHN GMKQMSANKP LVMPEDANGL KFRVQSSDVL
VAQMEAIGGS PQKMAFSEVY GALQQGVVDG QENTWSNIYG KKFFEVQDGI TETNHGVLDY
LVVASVDWLD SLEPEVRDQF MTIMTEVTAT RNAESTRVNN EAKEAIVAAG GEVRQLTAEQ
RQAWVDVMKP VWEQFSGDVG QDMIDAAQSI NAGF
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