| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1759 |
|---|
| Symbol | |
|---|
| ID | 4076788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1850388 |
|---|
| End bp | 1851149 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007074 |
|---|
| Product | phosphoadenosine phosphosulfate reductase |
|---|
| Protein accession | YP_613754 |
|---|
| Protein GI | 99081600 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0175] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes |
|---|
| TIGRFAM ID | [TIGR00434] phosophoadenylyl-sulfate reductase (thioredoxin) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.290781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTA TAGATCAGGA GATCAGGGGC CATCCCGCCG CTGCTGGCAG CGCTGAGGCC
CTGGCCGAGC AGGTTGCGGC GCTCAATGCC CGCTTCAAAC ACCACTCGGC CACCTCCGTG
ATGGAAGGGG CGCTGCGGGA TGCTGGCAAT ATCGCGCTGG TGTCGTCCTT TGGGGCGGAA
TCGGTGGTGC TGTTGCATAT GGCCGCCGTG ATCGACCCCT CGGTGCCGGT GCTCTTTGTG
GACACGGAAC TCTTGTTCAC AGAGACGCTG GTCTACCAGC AAGAAGTGAG CGAGCGCCTA
GGCCTCAGGA ATGTGCATGT CATCAAGGCG GATGACATCG CCGAAAAAGA CCCCTATGGC
GCGATGCGGT TTTCCGACAC CGACGCCTGC TGCACCCTGC GCAAGACCAT TCCGCTGCAA
AAGGCGCTCG CCGGCTATGA CGGCTGGATC ACCGGGCGCA AACGGTTTCA GTCCGGCACC
CGCGCCGCGC TCGACTTCTT TGAGGTCGAG GATGGCACCG GACGAATGAA GATCAACCCA
CTGGCCCATT GGGCGCCCGA AGACGTGCGC GCCTATATGG ATGAAAACCG CCTGCCCCGT
CACCCGCTGG TGGCCAAGGG CTATCCATCG ATCGGCTGCG AACCCTGCAC CAGCCCGGTC
GCAGAAGGCG AAGACCCCCG CGCCGGTCGC TGGCGCAACC AGAACAAGGA AGAATGCGGC
ATCCACGTTG TGGATGGCAA ATTCGTCCGT ACAGGAGCTT GA
|
|---|
| Protein sequence | MTRIDQEIRG HPAAAGSAEA LAEQVAALNA RFKHHSATSV MEGALRDAGN IALVSSFGAE
SVVLLHMAAV IDPSVPVLFV DTELLFTETL VYQQEVSERL GLRNVHVIKA DDIAEKDPYG
AMRFSDTDAC CTLRKTIPLQ KALAGYDGWI TGRKRFQSGT RAALDFFEVE DGTGRMKINP
LAHWAPEDVR AYMDENRLPR HPLVAKGYPS IGCEPCTSPV AEGEDPRAGR WRNQNKEECG
IHVVDGKFVR TGA
|
|---|
| |