| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1747 |
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| Symbol | |
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| ID | 4075811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1840384 |
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| End bp | 1841259 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638007061 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_613742 |
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| Protein GI | 99081588 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.087315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGGG ACAAGCGAAT AGCGCTCTGG ACAAGGGTTT CTTCACCTTC TTGCCATAAA
GAAGAGCTTA GAGATGGAAG GGAGATGACC TTGACGGATA CAGAAAAGTG CAAAGCATGT
CGCAACGGCA AAGGCTTCGA AGTCCCCATT TCCATGGCTT TTCATCCGAT TGTCTCCGTC
GGCTCCGGCA AAGTATTTGC CTATGAGGCC CTGGTGCGCG GACAGGATGG GTCTGGTGCT
GCGCAGGTCT TTGAGCAGGT CAATGACGAC AACCTCTATG CCTTCGACCA GAAATGCCGC
AAGACCGCGA TCGAACACGC CAGTCGCCTT GATCTCGGCG ACACCGGGTC GCTCTTGTCG
ATCAACTTCT TGCCCAATGC GGTTTATGAT CCCAAAGCCT GCATTCGCCT GACCTTGGAG
ACCGCAAAAA AGACCGGGTT TCCCGTGTCC CAGATCATGT TTGAGTTCAC CGAGGTCGAA
CGGATCTCTG CGCCGCATCT CCTCGACATC CTCAGCACCT ACCGTCGCCT TGGTTTTTTG
ACCTCGATCG ACGACTTCGG CGCTGGATAC GCCGGGTTAG ATCTATTGTC CCGGTTTCAG
CCGGATGTCG TGAAACTCGA CGCCGAACTC ACCCGAAATA TTGATCAGTC AAGCGTCAAA
CAGACCATCG TGCGGCACGT CATCTCCATG CTGGAGCAGC TTGGCATCAT CATCGTTGCA
GAAGGTATTG AAACGCAGGG GGAATTCTCC TGCCTCTATG ACCTAGGAGT TGACCTGATG
CAGGGCTGGC TGTTTGCAAA ACCAGGGTTT GAGACCCTTC CGGATGTCCG CTGGCCCGAC
GCGCTTCGGA GTGTCGAGGA AAGCAAAACC GCCTGA
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| Protein sequence | MLRDKRIALW TRVSSPSCHK EELRDGREMT LTDTEKCKAC RNGKGFEVPI SMAFHPIVSV
GSGKVFAYEA LVRGQDGSGA AQVFEQVNDD NLYAFDQKCR KTAIEHASRL DLGDTGSLLS
INFLPNAVYD PKACIRLTLE TAKKTGFPVS QIMFEFTEVE RISAPHLLDI LSTYRRLGFL
TSIDDFGAGY AGLDLLSRFQ PDVVKLDAEL TRNIDQSSVK QTIVRHVISM LEQLGIIIVA
EGIETQGEFS CLYDLGVDLM QGWLFAKPGF ETLPDVRWPD ALRSVEESKT A
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