| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1738 |
|---|
| Symbol | |
|---|
| ID | 4075802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1833164 |
|---|
| End bp | 1833802 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007052 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_613733 |
|---|
| Protein GI | 99081579 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3683] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0927626 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGA CATTTGCCAC CCTTGCCGTT CTTGCTGCGC CGCTTCCTGT GCTGGCGCAC
CCGCATATTT TTGTCGATAG CGGTCTCAAA CTCGAGGTGG ACGCCGAGGG CTTTCTCAAA
GCTGCCGAAG TGACCTGGGT CTATGATGAC TTTTACACGC TTCTTGTCTT CGAAGACATG
ATGCTCGACA GCGATTTCGA CGGCGCGCTG ACGCCCGCTG AACTCGAGCG GTTGAAGGGA
TTTGATCTCA ACTGGGTCGA GGGCTACGAG GGCGATCTCT ATCTCACCCA GCGCGACACG
CAACTCAGTC TTGGCGCGCC AGAGCATCTG AGCACCGAGG TCCGCGATGG CGTGATCATC
ACCCGGCATC GGCGCCCGGT GACAGAACCT GTCCCGGTTT TGGCCAATGG GGTGACGGCG
CGGATGTATG ATCCGACCTA TTACACCGCA TATGATCTGA ACCGAGGGGT CGAGATCACC
GGGCCCTGCG CCGCGCAGGT GACGCCGCCC AATCTGGATC AGGCCTACAC ATTGGTCGAA
GAGCTGCTCT ATTCGATGCC CACCGAGCAG GCCGAGGACG CGTTCCCGGA GGTTGGCTCC
GCGTTTGCAT CCACCGTCGC CGTGGCGTGT GAGGGCTGA
|
|---|
| Protein sequence | MIRTFATLAV LAAPLPVLAH PHIFVDSGLK LEVDAEGFLK AAEVTWVYDD FYTLLVFEDM
MLDSDFDGAL TPAELERLKG FDLNWVEGYE GDLYLTQRDT QLSLGAPEHL STEVRDGVII
TRHRRPVTEP VPVLANGVTA RMYDPTYYTA YDLNRGVEIT GPCAAQVTPP NLDQAYTLVE
ELLYSMPTEQ AEDAFPEVGS AFASTVAVAC EG
|
|---|
| |