| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1716 |
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| Symbol | |
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| ID | 4078292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1814631 |
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| End bp | 1815902 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007030 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_613711 |
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| Protein GI | 99081557 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTACA TGATGTCCTA CGACCTGATG GAGACGGTTC GTAACGCGAA CCAATGGCTT
GGCGCAACCG CGCTGTCCAT GGCCTCCTAT CCGGCCAATG CCGCCCTGCC GAACCCGATG
CTGAGCTGGA TGGCCGCATG GGGTCAGGTC ACAGAACGCA GTTTCGAGCG GATGGTGACC
AAGCCCGACT GGGGCATCCC GGCAACCACC CTGCCTGATG GTAAGGACCA TCTGGTCGAA
GTCGACACAA TCGTCGAAAA ACCGTTTGGG GATCTCATTC ATTTCCGGGT CACCGATCGC
GCTGAACAGC CGCGCAAGGT TCTGGTGGTG GCGCCGATGT CCGGCCATTA CGCCACGCTC
CTGCGCTCCA TGGTCAAAAG CTTGATCGAG AACTGCGAAG TCTATGTGAC AGACTGGCAC
AACGCCCGCG ACATTCCCGT CTCGGCCGGG AAATTCGATG TCGAGGATTA CACGCTCTAT
CTGGTTGAGT TCATGCGCGA ACTTGGCCCT GACACCCATG TGGTTGCCGT CTGTCAGCCG
GCGCCGCTCA CCCTGGCGGC GACCGCCTAT CTCGCAGAGA TCGACCCCAA GGCGCAGCCG
TCTTCGCTGA CCCTGATCGG CGGTCCCGTG GACCCTGACG CCACGCCCAC CGATGTGACC
GATTTTGGCC GCCGCGTGAC CATGGGACAG CTGGAGCAGA CCATGATCCA GCGCGTTGGC
TTCAAATACA AAGGGGTCGG TCGCAAGGTC TATCCCGGGC TGTTGCAGCT GGCTTCATTT
ATGTCGATGA ACATGGACCG CCACTCCAAG GCCTTTTCCG AGCAGATCAT GCGCGTCTGC
CGCGGCGAGG CCACGGATCA CGATGCCCAC AACCGCTTTT ACGACGAGTA TCTTGCAGTG
ATGGACATGC CGGCAGAGTT CTATCTCTCG ACGGTAGAGC GTGTCTTCAA ACAGCGCGAA
ATCGCCCAAA ACGCCTTTAC CGTCCAAGGT CACAAGATCG ACATCGGCAA GATCACGGAT
GTCGCGGTGA AAACCGTTGA AGGCTCCAAG GACGATATTT CCGCGCCCGG TCAATGCATT
GCAGCGCTGG ACCTCTGCAC CGGCCTGCCC GACTCGAAAA AGGCAAGCCA TGTAGAACCC
GGTGCCGGGC ACTATGGCAT CTTTGCCGGT CGTTCCTGGC GCAACAACAT CCGTCCGCTT
GTGATAGATT TCATGGATGC CAACGCGCGC CAACCTGTGC GCAAACAGCC CAAGAAAACC
GCAGCCAAAT AG
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| Protein sequence | MRYMMSYDLM ETVRNANQWL GATALSMASY PANAALPNPM LSWMAAWGQV TERSFERMVT
KPDWGIPATT LPDGKDHLVE VDTIVEKPFG DLIHFRVTDR AEQPRKVLVV APMSGHYATL
LRSMVKSLIE NCEVYVTDWH NARDIPVSAG KFDVEDYTLY LVEFMRELGP DTHVVAVCQP
APLTLAATAY LAEIDPKAQP SSLTLIGGPV DPDATPTDVT DFGRRVTMGQ LEQTMIQRVG
FKYKGVGRKV YPGLLQLASF MSMNMDRHSK AFSEQIMRVC RGEATDHDAH NRFYDEYLAV
MDMPAEFYLS TVERVFKQRE IAQNAFTVQG HKIDIGKITD VAVKTVEGSK DDISAPGQCI
AALDLCTGLP DSKKASHVEP GAGHYGIFAG RSWRNNIRPL VIDFMDANAR QPVRKQPKKT
AAK
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