| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1712 |
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| Symbol | |
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| ID | 4078288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1810083 |
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| End bp | 1810790 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007026 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_613707 |
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| Protein GI | 99081553 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCTC TGCTTCTTGG CTCTGCCGCA CTGGCACTGT CCGCAACCTT TGCCATGGCC
GACACCATCC GCCTCGGCAC CGAGGGCGCC TACCCTCCCT ACAACTTCAT CAACGACGCC
GGTGAAGTCG ACGGGTTCGA GCGCGAGCTG GGCGATGAGC TGTGCAAGCG CGCCGAACTG
ACCTGCGAGT GGGTCACCAA CGACTGGGAT TCGATCATTC CGAACCTGCT GTCGGGCAAC
TACGACGCGA TCATCGCGGG CATGTCGATC ACCGACGAGC GCAAGGAAGT TGTTTCCTTC
ACCGAAGGCT ACACCAAGCC CTCGCCCTCC GCTTACGCCG CCCTGTCCGA AGGTGTTGAC
GTGAACGCAA GCGTTGTTGC CGCGCAGTCC GGCACCATCC AGGCGGCACA TGTGGCCGAA
ACCGGCGCCA CCCTGGTGGA ATTCCCCACC CCGGATGAGA CCATCGCTGC CGTGAACTCC
GGCGAAGTCG ATGTGGTGCT CTCCGACAAG GACTTCCTCG CACCGATCGT TGAAGAATCC
GATCTGGTCT TCCTCGGCGA CGTCTACCTC GGTGGTGGCA TCGGCATGGC GTTCCGTCAG
TCCGACGACG AGATGCGCGG CAAGTTCGAT GCGGCGATTG CCTCGATGAA AGAAGACGGT
TCGCTCAACG AGCTGCTCGA CAAATGGGAG ATCGAGGGCA AGTTCTGA
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| Protein sequence | MKSLLLGSAA LALSATFAMA DTIRLGTEGA YPPYNFINDA GEVDGFEREL GDELCKRAEL
TCEWVTNDWD SIIPNLLSGN YDAIIAGMSI TDERKEVVSF TEGYTKPSPS AYAALSEGVD
VNASVVAAQS GTIQAAHVAE TGATLVEFPT PDETIAAVNS GEVDVVLSDK DFLAPIVEES
DLVFLGDVYL GGGIGMAFRQ SDDEMRGKFD AAIASMKEDG SLNELLDKWE IEGKF
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