| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1706 |
|---|
| Symbol | valS |
|---|
| ID | 4078282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1803784 |
|---|
| End bp | 1806879 |
|---|
| Gene Length | 3096 bp |
|---|
| Protein Length | 1031 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007020 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_613701 |
|---|
| Protein GI | 99081547 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.987588 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTGCA CATATATACT CCAAGACGTG ACGCACGGGG CATCTGATAT GGCACTGGAC
AAGACCTTTA ACGCAGCCGA GGCGGAGAGC CGCCTGTTTG ACGCCTGGGA AAAAGCGGGC
TGCTTTACCG CTGGCGCAAA TGCCAAACCG GGCGCGTCGA CCTACTGCAT CATGATCCCG
CCGCCCAATG TCACCGGCGT TCTGCACATG GGGCACGCGT TCAACAACAC GCTGCAGGAC
ATCCTCATCC GCTGGAAACG CATGCAGGGC TATGACACGC TCTGGCAGCC CGGCACAGAC
CACGCTGGCA TCGCCACGCA GATGGTGGTG GAGCGCAAGC TCGCCGAAAC TCAGCAGCCT
TCACGCCGTG AGCTGGGCCG TGAAAAATTC CTTGAAAAAG TCTGGGAATG GAAAGAGCAA
TCCGGCGGCA CCATCATCAA CCAGCTCAAG CGCCTCGGCG CGTCGTGTGA CTATGAGCGC
ACCGCCTTCA CCATGGCGGG CGCGCAGGGG GACACCCGCA CGGGCCATGA AAACTCGCCC
AACTTCCACG ACGCCGTCAT CAAGGTGTTT GTGGAGATGT ACAACAAGGG CCTCATCTAT
CGCGGCAAGC GACTGGTAAA CTGGGACCCG CATTTTGAGA CCGCGATTTC CGACCTTGAG
GTCGAAAACA TCGAAGTTGC GGGCCACATG TGGCACTTCA AATATCCGCT CGCCGGAGGG
GAGACCTATA CCTACATCGA GAAGGACGAG GACGGGAACG TCACGCTCGA AGAAGAGCGC
GACTATATCT CCATCGCGAC CACCCGCCCC GAGACCATGC TCGGCGACGG CGCGGTTGCG
GTGCACCCTT CGGACGAACG CTATGCGCCG ATCGTGGGCA AGCTGGTCGA AATCCCGGTC
GGCCCCAAGG AGCACCGCCG TCAGATCCCG ATCATCACCG ATGAATACCC GGACAAGGAT
TTTGGTTCCG GTGCCGTAAA GATCACCGGC GCGCATGACT TCAACGACTA TCAGGTCGCC
AAGCGCGGCG GCATCCCGAT GTACCGTCTG ATGGACATGA AAGGCGCAAT GCGCGCTGAT
GGTGCGCCTT ATGCCGAAGA AGCGGCAAAG GCCCAAGCCC ACGCGAAGGG TGCGGCGTTC
ACTGAAAACG AGGTAGATGC AATCAACCTC GTGCCCGATC ATCTGCGCGG GCTGGATCGC
TTTGAGGCGC GCAAGCTGGT GGTGCAGGAA ATCACCGACG AGGGTCTGGC GGTGATGCAG
ACCGTGACTA AAACCGTCAA AGACGATGAG GGCAATGAGA CCGAGGTGTC CGAGGTGGTC
CCGATGGTCG AAAACAAGCC GATCATGCAG CCCTTTGGCG ACCGCTCCAA AGTCGTGATC
GAGCCGATGC TGACTGACCA GTGGTTTGTC GACGCCGAAA AGGTTGTTGG CCCGGCGCTC
GATGCGGTGC GCAATGGCGA TGTGAAAATC CTGCCGGAAA GCGGCGAGAA GACCTATTAC
CACTGGCTGG AGAACATCGA ACCATGGTGT ATCTCACGTC AGCTGTGGTG GGGTCATCAG
ATCCCGGTTT GGTACGGGCC TGAAAAAGAT CTGCCTGATC CATTTGACAA AAACAAAGTC
GCCACAAAGG CATTTTGTGG TGCATCCAAA GAAGAGATTC TTCAACAAGC CAAAGACTAC
TATGGTGAAG ATGTACAGGT CTCCATCGGC GAAGATGGCT TTGAGTTCAT TGCAACCCCC
GATGCGGTGA TCCTTGAATC GGTTCAACTT CGTCGCGACC CCGACGTGCT CGACACCTGG
TTCTCCTCCG GCCTCTGGCC GATCGGCACG CTGGGCTGGC CCGAATGGAC CGAGGAGACG
TCCAAGTACT TCCCGACCTC GACGCTGGTC ACCGGTCAGG ACATCCTGTT CTTCTGGGTG
GCCCGGATGA TGATGATGCA GCTTGCCGTC GTCGATCAGA TCCCGTTTGA CACCGTCTAT
CTCCATGGCC TCGTGCGCGA TGCCAAGGGC AAAAAGATGT CGAAATCCAC CGGCAACGTC
ATCGACCCGC TTGAGATCAT TGACGAATAC GGCGCCGACG CGCTGCGGTT CACCAATGCG
GCGATGGCGA GCCTTGGCGG CGTGCTGAAG CTCGATATGC AGCGCATCGC GGGCTACCGC
AACTTTGGCA CCAAACTCTG GAACGCCGTG CGTTTTGCCG AGATGAACGA GGTCTTTACC
GACGCCGTAC CGCAGTTGAC CGTGGACGAC CTTGCCCCCA AGGCGGCCGT CAACGCCTGG
ATCGTGGGCG AGACCGCCCG CGTGCGCGAA GCGGTGGACG AGGCGATGGA AACATTCCGG
TTCAACGACG CGGCGCAAGC GCTTTATGGC TTTGTCTGGG GCAAGGTCTG CGACTGGTAT
GTCGAGCTCT CCAAGCCGCT GCTGCAAGGC GATGACACCG AGGCGCAGGC CGAAACCCGC
GCCACCATGC GCTGGGTCAT GGATCAGTGC ATGATCCTCT TGCACCCCAT TATGCCCTTC
ATCACCGAAG AGCTCTGGGG CGCCACCGGA CCGCGCGCCA AGATGCTGGT GCATGCAGAT
TGGCCGACCT ACAAGGCCGC CGATCTGGTA AAGCCCGAAG CCGATGCAGA GATGAACTGG
GTCATTTCCG TCATTGAGAA CACCCGCTCC GCCCGCGCGC AGATGCATGT GCCCGCTGGG
CTCTATGTGG AGATGCTCGT GACGGAGATT GATGCAGCCG GTCAGGCCGC ATGGGAGGCC
AACGAGACGC TGATCAAACG TCTGGCGCGG ATTGAGAGCC TGTCCAAAAT CGAGACCGCC
CCCAAAGGCT GCGTGTCGAT CTCTGCGCCG GGGGCGTCGT TCCTGCTGCC GCTCGCGGAC
ATCATCGACA TCGACGGCGA AAAGGCCCGG CTTGAAAAAT CGCTTGGAAA ACTCGCCAAG
GAGCTCGGTG GTCTGCGCGG ACGTCTGAAC AATCCGAAGT TCATCGCTTC CGCTCCCGAA
GAGGTGGTCG AGGAAGCCCG CGAAAACCTC GCCGCGCGCG AAGAGGAAGA GACCAAGCTC
AAAGAGGCGC TCTCGCGGCT TGCCGAAATC GGCTGA
|
|---|
| Protein sequence | MACTYILQDV THGASDMALD KTFNAAEAES RLFDAWEKAG CFTAGANAKP GASTYCIMIP
PPNVTGVLHM GHAFNNTLQD ILIRWKRMQG YDTLWQPGTD HAGIATQMVV ERKLAETQQP
SRRELGREKF LEKVWEWKEQ SGGTIINQLK RLGASCDYER TAFTMAGAQG DTRTGHENSP
NFHDAVIKVF VEMYNKGLIY RGKRLVNWDP HFETAISDLE VENIEVAGHM WHFKYPLAGG
ETYTYIEKDE DGNVTLEEER DYISIATTRP ETMLGDGAVA VHPSDERYAP IVGKLVEIPV
GPKEHRRQIP IITDEYPDKD FGSGAVKITG AHDFNDYQVA KRGGIPMYRL MDMKGAMRAD
GAPYAEEAAK AQAHAKGAAF TENEVDAINL VPDHLRGLDR FEARKLVVQE ITDEGLAVMQ
TVTKTVKDDE GNETEVSEVV PMVENKPIMQ PFGDRSKVVI EPMLTDQWFV DAEKVVGPAL
DAVRNGDVKI LPESGEKTYY HWLENIEPWC ISRQLWWGHQ IPVWYGPEKD LPDPFDKNKV
ATKAFCGASK EEILQQAKDY YGEDVQVSIG EDGFEFIATP DAVILESVQL RRDPDVLDTW
FSSGLWPIGT LGWPEWTEET SKYFPTSTLV TGQDILFFWV ARMMMMQLAV VDQIPFDTVY
LHGLVRDAKG KKMSKSTGNV IDPLEIIDEY GADALRFTNA AMASLGGVLK LDMQRIAGYR
NFGTKLWNAV RFAEMNEVFT DAVPQLTVDD LAPKAAVNAW IVGETARVRE AVDEAMETFR
FNDAAQALYG FVWGKVCDWY VELSKPLLQG DDTEAQAETR ATMRWVMDQC MILLHPIMPF
ITEELWGATG PRAKMLVHAD WPTYKAADLV KPEADAEMNW VISVIENTRS ARAQMHVPAG
LYVEMLVTEI DAAGQAAWEA NETLIKRLAR IESLSKIETA PKGCVSISAP GASFLLPLAD
IIDIDGEKAR LEKSLGKLAK ELGGLRGRLN NPKFIASAPE EVVEEARENL AAREEEETKL
KEALSRLAEI G
|
|---|
| |