Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1696 |
Symbol | |
ID | 4078272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1793112 |
End bp | 1793882 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638007010 |
Product | rhomboid-like protein |
Protein accession | YP_613691 |
Protein GI | 99081537 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0169703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.97401 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCCTC TGCGTGATCA CAACCCCTCC GGCCGAACGC CTTATGTCGT CTACCTGCTG ATGGCGGCCA ATATTTTGGG CTTTCTCTGG TATTCCACCA GCTTTCCCAC CGACAGAAGC CTTGCGCTTT TTTACGCCAG CTTCGCCACG GTCCCACGAG AGATCACGAT GGGAGAAGGA ACACTCACGC TGCTCACCTC CATGTTCATC CACGGCGGGA TCATGCATCT GGCGGGCAAC ATGCTGTTTC TGTGGATCTT TGGCGACAAC ATGGAAGACG AAATGGGCCA CCTGCCGTTT CTCGCCTTCT ATCTCATCTG CGGGGTGGGA GCGACGTTGG CTCATGTCTG GTCCGCGCCG CTCTCGATGG TGCCACTGGT GGGAGCCTCC GGTGCAATTG CGGGCGTCAT GGGCGGCTAC CTTCTGATGT TTCCAAAGGC CCGCGTCGAT ATTCTCATCA TCCTGATCAT CTTCTTTCGC ATCATCCCGA TCCCCGCCTT CATCATGCTA GGGCTCTGGC TTGCGATGCA GTTCTTTGGT GGCCTCAACG CCGATCCGAA CCTGGGCGGT GTCGCTTATT GGGCGCATGC TGGTGGTTTC TTTGTCGGCC TTGCCCTGAC CGTGCCGCTC TGGATCATAC GCGGGGGGCC ACGGTTCTGG TCACGCACTC AGGGCCATCC ACCGCATCCT GGAACCAGCT ATAGCGCCAG CCGCATTCCC CGCGTCCGCC GCCGCAACAC ACCGCCTCGC AGCGGCCCTT GGGGCAAGTA A
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Protein sequence | MFPLRDHNPS GRTPYVVYLL MAANILGFLW YSTSFPTDRS LALFYASFAT VPREITMGEG TLTLLTSMFI HGGIMHLAGN MLFLWIFGDN MEDEMGHLPF LAFYLICGVG ATLAHVWSAP LSMVPLVGAS GAIAGVMGGY LLMFPKARVD ILIILIIFFR IIPIPAFIML GLWLAMQFFG GLNADPNLGG VAYWAHAGGF FVGLALTVPL WIIRGGPRFW SRTQGHPPHP GTSYSASRIP RVRRRNTPPR SGPWGK
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