Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1695 |
Symbol | |
ID | 4078271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1789603 |
End bp | 1793010 |
Gene Length | 3408 bp |
Protein Length | 1135 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007009 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_613690 |
Protein GI | 99081536 |
COG category | [C] Energy production and conversion |
COG ID | [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.131291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.512198 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCGTG ATATGCGCCT ACGCGACCGG ATTGATGCCG GCACCTATTT GGATCAGGCC AATATGCGCG ATGCGCTGGT GGCTCTGGCC GCTCTGTCCG AAGCGGATCG CTCCGCCATC TGTGCCTCGG CCACCCAATT GGTGAAAGAC ATCCGTGGCC ATTCCTCGCC CGGCTTGATG GAAGTGTTCC TCGCCGAATA TGGCCTATCG ACCGACGAAG GCGTGGCCCT CATGTGCCTC GCAGAAGCGC TCTTGCGGGT GCCGGATGCG GACACCATCG ATGCGCTCAT CGAAGACAAG ATCGCCCCCT CCGATTGGGG TAAGCACATG GGCAAGTCGA CCTCCTCTCT GGTCAATGCC TCCACTTGGG CGCTGATGCT GACGGGCAAG GTTCTGGACG AGGAAAAGAG CCCCGTCGGC GCGCTGCGTG GGGCCATCAA ACGGCTGGGC GAGCCGGTGA TCCGCACCGC CGTGGGCCGC GCCATGAAGG AAATGGGCCG TCAGTTTGTT CTTGGGGAGA CCATCGAGAG TGCGATGAAA CGCGCGTCGA ACATGGAAGC CAAGGGCTAT ACCTATTCCT ACGACATGCT GGGCGAGGCT GCGCGTACCG AGGCAGACGC CTCGCGCTAT CACCTGGCCT ATTCCCGCGC GATTTCGGCC ATTGCCAGCG CCTGCACCAG CACCGACATC CGCGAAAACC CCGGCATCTC GGTCAAACTC TCGGCGCTGC ATCCACGCTA CGAGATCGCC AAGGAAGAGT CCGTCATGCA ACAGCTGGTG CCGCGTCTGA AGGCACTGGC GCTTCTGGCC AAGGCGGCCA AGATGGGGCT CAACATCGAC GCCGAAGAAG CTGATCGCCT GTCGCTGTCG CTCGAAGTGA TCGAAGAAGT GATCTCTGAC CCCGCGCTCA AGGGTTGGGA CGGTTTTGGC GTGGTGGTGC AGGCTTATGG GCCCCGCACC GGGCTGGCGA TTGATGCCCT TTATGAGATG GCCGAAAAAT ACGACCGCCG CTTTATGGTT CGCCTGGTAA AAGGCGCCTA CTGGGACACC GAGATCAAGC GCGCTCAGGT TGAAGGCATG GACGGTTTCC CGGTCTTCAC CTCCAAGGCG CTGACGGATG TGTCCTACAT CGCCAATGCA CGCAAACTCC TGTCGCGCAC CGATCGGATC TATCCGCAGT TTGCCACCCA CAACGCCCAC ACCGTCAGCG CCATTCTGCA TATGGCCGAA GAAGGTCAGG CCTATGAGTT CCAGCGCTTG CACGGCATGG GCGAAACCCT GCACCAGATG GTGATGGACC AGAACAAGAC GCGCTGCCGG ATCTACGCGC CAGTGGGCGC GCATCGCGAT CTTCTGGCCT ATCTGGTGCG TCGCCTGCTG GAAAACGGTG CGAACTCTTC TTTTGTGAAC CAGATCGTTG ACGAGGACGT ACCACCGCAA GTGGTGGCAG CTGATCCGTT CCAGGAGGTC GATGACCTGA CAACCGATAT CCCCACCGGC CCCAATCTGT TCCAGCCCGA GCGCATCAAC TCCAAAGGGT TTGATCTGCG TCACGCGCCA ACCTTGGCCG CAATCGAGAA GGCCCGCGCG CCCTTCCGGG AGGCCACCTG GGACGCGGTT CCGCTGATCG CGGGCGAAGC ACAGCCCGAG GCCCGCGTTG CGGTCACAAA CCCAAGCGAT CTCAGTGAAA TCGGCAGCGT GTCTCAATCC AGTGCCGAAG ACGTGGAACT GGCGCTTGCC TCGGCCAACA CCTGGGACGC CCCCGCTGAG GAGCGCGCCG CCGCACTGAA CAAGGCGGCT GACCTCTATG AGGCGCATTA CGGCGAGCTC TTTGCGCTCT TGGCCCGTGA GGCCGGCAAA ACCCAGATGG ATGCCGTCGC AGAGCTGCGC GAAGCGGTGG ACTTCCTGCG CTATTATGCC TCCCGCATCC CGGATGCAGC GCCAGCGGGT ATCTTCACCT GCATCTCACC CTGGAACTTC CCGCTCGCGA TCTTCACCGG GCAGGTTTCG GCTGCGCTTG CCACGGGCAA TGCGGTGCTG GCAAAACCTG CGGACCAGAC CCCGCTGGTG GCCTTCCGCG CCGTGGAACT GCTGCATGAG GCAGGTGTTC CACGCGATGT GCTGCAGTTC CTCCCCGGGC GCGGCTCCAA GGTTGGCGCA GCCATCACGG GTGATGCACG CATCAACGGC GTTGCGTTTA CCGGCTCCAC CGCAACCGCC ATGCGGATCC GCTCGGCCAT GGCCGAGCAT TGCGCCCCCG GCACGCCTCT CATTGCAGAG ACAGGCGGTC TAAATGCGAT GATCGTTGAT TCAACCGCGC TGCCCGAACA AGCGGTGCAG GCCGTGGTCG AAAGCGCGTT TCAGTCTGCA GGCCAGCGTT GCTCGGCGCT GCGCTGCCTC TACCTGCAGG AGGACGTGGC CGAAGACGTG CTGACGATGC TTAAAGGCGC GATGGAGCTC CTTGATCTTG ATGATCCCTG GCATCTTGCG ACCGACAGCG GCCCGGTGAT CGACGAAGGA TCACGCGCCA AGATCCTCGC CCATATCGAC GAGGCCCGCG CTGAGGGGCG CGTCCTGAAG GAAATGCAGG CGCCACAGAG CGGCACCTTT GTGGCGCCGA CAATGATTTC GATCAACGGG ATCAGCGACC TCAAGGAAGA GATCTTTGGC CCCGTCCTGC ATGTCGCCAC CTTCAAATCG CGCGAGCTTG ATGCCGTGAT CGACGCGATC AACGCCACGG GCTATGGGCT GACCTTCGGC CTGCAGACAA GAATTGATGA CCGCGTACAG CACGTCTGCG ACCGCATCCA CGCGGGCAAC ATCTATGTGA ACCGCAACCA GATCGGCGCT ATTGTCGGCA GCCAACCCTT TGGGGGCGAA GGCCTTTCCG GCACTGGTCC CAAAGCAGGC GGCCCGAACT ACCTGGCCCG TTTCTGTGCT CCGGATCGCC GCCAGGTTGA CGCCGCATGG AAAGACACCA TGGGCGAGAT CCCCGCGGCA CGCGGCCAAG CCGGACATCC CGAAACCACC TCCCTGCCCG GCCCCACAGG TGAATCAAAC CGCCTCACGG TCTCGGCACG CCCGCCACTT CTCTGTGCGG GCCCCGGCGC CGAGGCCGTC TCTGAACAGG CCAAACTGGT CGCGTCTCTG GGCGGCATCG CCATCGAGGC CGACGGCATG GTGGACCTGC ACCGGCTGGC GCATATGGAT GGGATCTCTG GCGTTCTATG GTGGGGCGAT GCGGACACGG GGCGCGAGAT CGAACAGAGC CTCGCCAAAC GTGAGGGACC GATTGTGCCG CTCATTCCCG GCGCGCCGGA TCGCGCGCGG GTGCTCGCTG AACGCCATGT CTGTGTCGAC ACCACGGCAG CCGGGGGCAA CGCAGCCCTT CTGGGTGGCA ACGCCTGA
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Protein sequence | MTRDMRLRDR IDAGTYLDQA NMRDALVALA ALSEADRSAI CASATQLVKD IRGHSSPGLM EVFLAEYGLS TDEGVALMCL AEALLRVPDA DTIDALIEDK IAPSDWGKHM GKSTSSLVNA STWALMLTGK VLDEEKSPVG ALRGAIKRLG EPVIRTAVGR AMKEMGRQFV LGETIESAMK RASNMEAKGY TYSYDMLGEA ARTEADASRY HLAYSRAISA IASACTSTDI RENPGISVKL SALHPRYEIA KEESVMQQLV PRLKALALLA KAAKMGLNID AEEADRLSLS LEVIEEVISD PALKGWDGFG VVVQAYGPRT GLAIDALYEM AEKYDRRFMV RLVKGAYWDT EIKRAQVEGM DGFPVFTSKA LTDVSYIANA RKLLSRTDRI YPQFATHNAH TVSAILHMAE EGQAYEFQRL HGMGETLHQM VMDQNKTRCR IYAPVGAHRD LLAYLVRRLL ENGANSSFVN QIVDEDVPPQ VVAADPFQEV DDLTTDIPTG PNLFQPERIN SKGFDLRHAP TLAAIEKARA PFREATWDAV PLIAGEAQPE ARVAVTNPSD LSEIGSVSQS SAEDVELALA SANTWDAPAE ERAAALNKAA DLYEAHYGEL FALLAREAGK TQMDAVAELR EAVDFLRYYA SRIPDAAPAG IFTCISPWNF PLAIFTGQVS AALATGNAVL AKPADQTPLV AFRAVELLHE AGVPRDVLQF LPGRGSKVGA AITGDARING VAFTGSTATA MRIRSAMAEH CAPGTPLIAE TGGLNAMIVD STALPEQAVQ AVVESAFQSA GQRCSALRCL YLQEDVAEDV LTMLKGAMEL LDLDDPWHLA TDSGPVIDEG SRAKILAHID EARAEGRVLK EMQAPQSGTF VAPTMISING ISDLKEEIFG PVLHVATFKS RELDAVIDAI NATGYGLTFG LQTRIDDRVQ HVCDRIHAGN IYVNRNQIGA IVGSQPFGGE GLSGTGPKAG GPNYLARFCA PDRRQVDAAW KDTMGEIPAA RGQAGHPETT SLPGPTGESN RLTVSARPPL LCAGPGAEAV SEQAKLVASL GGIAIEADGM VDLHRLAHMD GISGVLWWGD ADTGREIEQS LAKREGPIVP LIPGAPDRAR VLAERHVCVD TTAAGGNAAL LGGNA
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