Gene TM1040_1695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1695 
Symbol 
ID4078271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1789603 
End bp1793010 
Gene Length3408 bp 
Protein Length1135 aa 
Translation table11 
GC content63% 
IMG OID638007009 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_613690 
Protein GI99081536 
COG category[C] Energy production and conversion 
COG ID[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.131291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.512198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCGTG ATATGCGCCT ACGCGACCGG ATTGATGCCG GCACCTATTT GGATCAGGCC 
AATATGCGCG ATGCGCTGGT GGCTCTGGCC GCTCTGTCCG AAGCGGATCG CTCCGCCATC
TGTGCCTCGG CCACCCAATT GGTGAAAGAC ATCCGTGGCC ATTCCTCGCC CGGCTTGATG
GAAGTGTTCC TCGCCGAATA TGGCCTATCG ACCGACGAAG GCGTGGCCCT CATGTGCCTC
GCAGAAGCGC TCTTGCGGGT GCCGGATGCG GACACCATCG ATGCGCTCAT CGAAGACAAG
ATCGCCCCCT CCGATTGGGG TAAGCACATG GGCAAGTCGA CCTCCTCTCT GGTCAATGCC
TCCACTTGGG CGCTGATGCT GACGGGCAAG GTTCTGGACG AGGAAAAGAG CCCCGTCGGC
GCGCTGCGTG GGGCCATCAA ACGGCTGGGC GAGCCGGTGA TCCGCACCGC CGTGGGCCGC
GCCATGAAGG AAATGGGCCG TCAGTTTGTT CTTGGGGAGA CCATCGAGAG TGCGATGAAA
CGCGCGTCGA ACATGGAAGC CAAGGGCTAT ACCTATTCCT ACGACATGCT GGGCGAGGCT
GCGCGTACCG AGGCAGACGC CTCGCGCTAT CACCTGGCCT ATTCCCGCGC GATTTCGGCC
ATTGCCAGCG CCTGCACCAG CACCGACATC CGCGAAAACC CCGGCATCTC GGTCAAACTC
TCGGCGCTGC ATCCACGCTA CGAGATCGCC AAGGAAGAGT CCGTCATGCA ACAGCTGGTG
CCGCGTCTGA AGGCACTGGC GCTTCTGGCC AAGGCGGCCA AGATGGGGCT CAACATCGAC
GCCGAAGAAG CTGATCGCCT GTCGCTGTCG CTCGAAGTGA TCGAAGAAGT GATCTCTGAC
CCCGCGCTCA AGGGTTGGGA CGGTTTTGGC GTGGTGGTGC AGGCTTATGG GCCCCGCACC
GGGCTGGCGA TTGATGCCCT TTATGAGATG GCCGAAAAAT ACGACCGCCG CTTTATGGTT
CGCCTGGTAA AAGGCGCCTA CTGGGACACC GAGATCAAGC GCGCTCAGGT TGAAGGCATG
GACGGTTTCC CGGTCTTCAC CTCCAAGGCG CTGACGGATG TGTCCTACAT CGCCAATGCA
CGCAAACTCC TGTCGCGCAC CGATCGGATC TATCCGCAGT TTGCCACCCA CAACGCCCAC
ACCGTCAGCG CCATTCTGCA TATGGCCGAA GAAGGTCAGG CCTATGAGTT CCAGCGCTTG
CACGGCATGG GCGAAACCCT GCACCAGATG GTGATGGACC AGAACAAGAC GCGCTGCCGG
ATCTACGCGC CAGTGGGCGC GCATCGCGAT CTTCTGGCCT ATCTGGTGCG TCGCCTGCTG
GAAAACGGTG CGAACTCTTC TTTTGTGAAC CAGATCGTTG ACGAGGACGT ACCACCGCAA
GTGGTGGCAG CTGATCCGTT CCAGGAGGTC GATGACCTGA CAACCGATAT CCCCACCGGC
CCCAATCTGT TCCAGCCCGA GCGCATCAAC TCCAAAGGGT TTGATCTGCG TCACGCGCCA
ACCTTGGCCG CAATCGAGAA GGCCCGCGCG CCCTTCCGGG AGGCCACCTG GGACGCGGTT
CCGCTGATCG CGGGCGAAGC ACAGCCCGAG GCCCGCGTTG CGGTCACAAA CCCAAGCGAT
CTCAGTGAAA TCGGCAGCGT GTCTCAATCC AGTGCCGAAG ACGTGGAACT GGCGCTTGCC
TCGGCCAACA CCTGGGACGC CCCCGCTGAG GAGCGCGCCG CCGCACTGAA CAAGGCGGCT
GACCTCTATG AGGCGCATTA CGGCGAGCTC TTTGCGCTCT TGGCCCGTGA GGCCGGCAAA
ACCCAGATGG ATGCCGTCGC AGAGCTGCGC GAAGCGGTGG ACTTCCTGCG CTATTATGCC
TCCCGCATCC CGGATGCAGC GCCAGCGGGT ATCTTCACCT GCATCTCACC CTGGAACTTC
CCGCTCGCGA TCTTCACCGG GCAGGTTTCG GCTGCGCTTG CCACGGGCAA TGCGGTGCTG
GCAAAACCTG CGGACCAGAC CCCGCTGGTG GCCTTCCGCG CCGTGGAACT GCTGCATGAG
GCAGGTGTTC CACGCGATGT GCTGCAGTTC CTCCCCGGGC GCGGCTCCAA GGTTGGCGCA
GCCATCACGG GTGATGCACG CATCAACGGC GTTGCGTTTA CCGGCTCCAC CGCAACCGCC
ATGCGGATCC GCTCGGCCAT GGCCGAGCAT TGCGCCCCCG GCACGCCTCT CATTGCAGAG
ACAGGCGGTC TAAATGCGAT GATCGTTGAT TCAACCGCGC TGCCCGAACA AGCGGTGCAG
GCCGTGGTCG AAAGCGCGTT TCAGTCTGCA GGCCAGCGTT GCTCGGCGCT GCGCTGCCTC
TACCTGCAGG AGGACGTGGC CGAAGACGTG CTGACGATGC TTAAAGGCGC GATGGAGCTC
CTTGATCTTG ATGATCCCTG GCATCTTGCG ACCGACAGCG GCCCGGTGAT CGACGAAGGA
TCACGCGCCA AGATCCTCGC CCATATCGAC GAGGCCCGCG CTGAGGGGCG CGTCCTGAAG
GAAATGCAGG CGCCACAGAG CGGCACCTTT GTGGCGCCGA CAATGATTTC GATCAACGGG
ATCAGCGACC TCAAGGAAGA GATCTTTGGC CCCGTCCTGC ATGTCGCCAC CTTCAAATCG
CGCGAGCTTG ATGCCGTGAT CGACGCGATC AACGCCACGG GCTATGGGCT GACCTTCGGC
CTGCAGACAA GAATTGATGA CCGCGTACAG CACGTCTGCG ACCGCATCCA CGCGGGCAAC
ATCTATGTGA ACCGCAACCA GATCGGCGCT ATTGTCGGCA GCCAACCCTT TGGGGGCGAA
GGCCTTTCCG GCACTGGTCC CAAAGCAGGC GGCCCGAACT ACCTGGCCCG TTTCTGTGCT
CCGGATCGCC GCCAGGTTGA CGCCGCATGG AAAGACACCA TGGGCGAGAT CCCCGCGGCA
CGCGGCCAAG CCGGACATCC CGAAACCACC TCCCTGCCCG GCCCCACAGG TGAATCAAAC
CGCCTCACGG TCTCGGCACG CCCGCCACTT CTCTGTGCGG GCCCCGGCGC CGAGGCCGTC
TCTGAACAGG CCAAACTGGT CGCGTCTCTG GGCGGCATCG CCATCGAGGC CGACGGCATG
GTGGACCTGC ACCGGCTGGC GCATATGGAT GGGATCTCTG GCGTTCTATG GTGGGGCGAT
GCGGACACGG GGCGCGAGAT CGAACAGAGC CTCGCCAAAC GTGAGGGACC GATTGTGCCG
CTCATTCCCG GCGCGCCGGA TCGCGCGCGG GTGCTCGCTG AACGCCATGT CTGTGTCGAC
ACCACGGCAG CCGGGGGCAA CGCAGCCCTT CTGGGTGGCA ACGCCTGA
 
Protein sequence
MTRDMRLRDR IDAGTYLDQA NMRDALVALA ALSEADRSAI CASATQLVKD IRGHSSPGLM 
EVFLAEYGLS TDEGVALMCL AEALLRVPDA DTIDALIEDK IAPSDWGKHM GKSTSSLVNA
STWALMLTGK VLDEEKSPVG ALRGAIKRLG EPVIRTAVGR AMKEMGRQFV LGETIESAMK
RASNMEAKGY TYSYDMLGEA ARTEADASRY HLAYSRAISA IASACTSTDI RENPGISVKL
SALHPRYEIA KEESVMQQLV PRLKALALLA KAAKMGLNID AEEADRLSLS LEVIEEVISD
PALKGWDGFG VVVQAYGPRT GLAIDALYEM AEKYDRRFMV RLVKGAYWDT EIKRAQVEGM
DGFPVFTSKA LTDVSYIANA RKLLSRTDRI YPQFATHNAH TVSAILHMAE EGQAYEFQRL
HGMGETLHQM VMDQNKTRCR IYAPVGAHRD LLAYLVRRLL ENGANSSFVN QIVDEDVPPQ
VVAADPFQEV DDLTTDIPTG PNLFQPERIN SKGFDLRHAP TLAAIEKARA PFREATWDAV
PLIAGEAQPE ARVAVTNPSD LSEIGSVSQS SAEDVELALA SANTWDAPAE ERAAALNKAA
DLYEAHYGEL FALLAREAGK TQMDAVAELR EAVDFLRYYA SRIPDAAPAG IFTCISPWNF
PLAIFTGQVS AALATGNAVL AKPADQTPLV AFRAVELLHE AGVPRDVLQF LPGRGSKVGA
AITGDARING VAFTGSTATA MRIRSAMAEH CAPGTPLIAE TGGLNAMIVD STALPEQAVQ
AVVESAFQSA GQRCSALRCL YLQEDVAEDV LTMLKGAMEL LDLDDPWHLA TDSGPVIDEG
SRAKILAHID EARAEGRVLK EMQAPQSGTF VAPTMISING ISDLKEEIFG PVLHVATFKS
RELDAVIDAI NATGYGLTFG LQTRIDDRVQ HVCDRIHAGN IYVNRNQIGA IVGSQPFGGE
GLSGTGPKAG GPNYLARFCA PDRRQVDAAW KDTMGEIPAA RGQAGHPETT SLPGPTGESN
RLTVSARPPL LCAGPGAEAV SEQAKLVASL GGIAIEADGM VDLHRLAHMD GISGVLWWGD
ADTGREIEQS LAKREGPIVP LIPGAPDRAR VLAERHVCVD TTAAGGNAAL LGGNA