| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1599 |
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| Symbol | |
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| ID | 4078408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1710889 |
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| End bp | 1711800 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638006912 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_613594 |
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| Protein GI | 99081440 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0042965 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.464742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATG CGTACCTTCA AAGCCTCCAC ACCAGCGCGT CTCTTCGGCA GCTCTTGCAG
TTGCGTCCCT TTGAGGCGCC CGTGTCATCT GAAATGGGCG ATAGCCGGAT CGAGTTGGAG
GCCGAGAACG GAACGCGCCT TGTTCTTGAC GGGTCGTTCT CTTCCGAGGA CGAAGGGAGC
TGGGTCATTT ATGCTCTGGC GCTCTATGAC GGGGCCGACA CGCTGGTGTC GATCTCGGAC
ATGGCGCTCT CCTACGAGGA TTTTTTTGCA GCCAATGGCA GAGAGCGCCT GAACATGGTG
TTCGAAGGCG CCGATGAGAT CACGTCTAAT CTCGGCTCTG GTCTTCGTAT GAATTTTCAA
GCCGGCGATG ACGTTATCAC CCTTGGCTTC GGTGATGACG TGATCAACGG CGGTCGTGGC
AACGACACGG TGTCTGCCGG GGCAGGGAAT GACACGATCA ACGGCAACGC GGGCAGAGAC
CAGATCAATG GCCATGACGG AGACGACGTC CTGACGGGCG GCGGCGGTCG CGACAAGCTA
AACGGTGGTG TTGGAAACGA CGTTCTGTCC GGGAACGCGG GACGCGACAA GCTGGTCGGT
GGCACTGGCA ATGACACGCT CTCTGGCGGT GCGGATGATG ATGTCCTGCG CGGTGGAACC
GGCGATGACG TTCTGACCGG CGGCGCGGGC GCAGATGTGT TCAAGTTTCG GGCCAATGAC
CACACCAATG TGATTACAGA CTTCGAAGTT GGCGTCGATC ACATCGAGGT CCTCAAAGGC
GCGCGCGGTA TGCGTGGCGT TGATTTTGAG CAAATCGGCG ACGATGTGGC GGTCTATTTC
GGCAACGTAA CCGTGATTGT CCAAGACACC ACGGTCGAGT TGATGGACGA CAGCGACAAC
TTCTTGTTCT GA
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| Protein sequence | MANAYLQSLH TSASLRQLLQ LRPFEAPVSS EMGDSRIELE AENGTRLVLD GSFSSEDEGS
WVIYALALYD GADTLVSISD MALSYEDFFA ANGRERLNMV FEGADEITSN LGSGLRMNFQ
AGDDVITLGF GDDVINGGRG NDTVSAGAGN DTINGNAGRD QINGHDGDDV LTGGGGRDKL
NGGVGNDVLS GNAGRDKLVG GTGNDTLSGG ADDDVLRGGT GDDVLTGGAG ADVFKFRAND
HTNVITDFEV GVDHIEVLKG ARGMRGVDFE QIGDDVAVYF GNVTVIVQDT TVELMDDSDN
FLF
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