| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1589 |
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| Symbol | |
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| ID | 4078398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1700175 |
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| End bp | 1701434 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006902 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_613584 |
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| Protein GI | 99081430 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.658577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCTT TGATCTTTGC TTTCAAACTC TTGATCGCGG TGCCGGTGGC CTTGGTTCTG
GCGCTCACGG CCATCTGGTA CATCTGGGAG AGCGGCAACA CGGTCCTCTA TGACAGTTTT
GCGCAAAAGA TGTTCTCCGG GCTAGAGAGT TACGGCCTGC TGGCGATCCC GCTGTTCATG
CTGACGGGGG AGATGATGAA CGAAGGCGGC ATGACCCGCC GCTTGATCAA TGCGGCTCGG
GTCTTTGTCG GCGGGTTTCG CGGTGGGCTC GCCTATATCA ACCTGCTGAC CAATATGTTC
ATGGCGGCGA TCATCGGATC GGCCACAGCG CAGATCGCGG TGATGGCCCG TGCGATGACG
CCAGAGATGG AAAAAGAGGG GTATGACACG GGCTTTGCCG CTGCCACGAC AGCGGCGGGC
GGGTTGCTTG CGCCGGTCAT CCCGCCGTCG ATGATGTTCG TGATCTTCGG CGTACTGGCC
CAGGTTCCGA TTGGCGAGAT GTTTCTTGCA GGCCTCATTC CGGGGATGAT GCTTGCAGGG
GCCTTTGCGC TGGTGATCTT CGGGATCGGT GTCGCCACAG GCTTTCCAAA GGGCAGCTGG
TTCACCGCGC CAGAGGCGTT CTCGGCGCTT CTATATTGCT TGCCCGCAGC GCTGATCCCC
TGTGCGATCA TCGGCGGTGT GGTGTTTGGG ATTGCAACCC CGACCGAGAG CGCTGCAATC
GCCTCTCTGC TGGCCTTTGG GATGGGGTGG CTGGTCTATG GCGAACTGAA GCCTGCGGCC
CTCTTTGCGA TGTTCCGTCG CACTGCCATC AACGCCTCGA TGATCATCTT CATGATCGCC
TGTGCCAATG TCTTTGGCTG GGTCATCATC TACGAGGCCC TGCCACAAAA GCTCGCGGCG
CTGATCACCT CGATCACCAG TGACCCGTTT CTGTTTCTGC TGATCGTCAA TCTGATCCTG
CTGCTGATCG GGATGCTGGT GGATGGGATC GCCGCCGTGA TCCTGATCTC GCCCATCTTG
TTGCCGATCG CGGTAAACCA CTATGACATC AGCGCCCATC AATTTGGTGT CGTCATGTGC
CTGAACCTCG TGCTGGGCTT GCTGACACCG CCCGTTGGGG TCGGGCTTTA TATTGCGTCT
TCCATGAGTG GCGCCACGCC CGGCCAGATC CTGCGCTCCC TCTGGCCATT CCTTTTGGCG
GTAGCGCTAA TCCTTGTCCT ATTGAGCCGG TTTCCTGTGT TGTCGACCGC GTTTCTATAG
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| Protein sequence | MTPLIFAFKL LIAVPVALVL ALTAIWYIWE SGNTVLYDSF AQKMFSGLES YGLLAIPLFM
LTGEMMNEGG MTRRLINAAR VFVGGFRGGL AYINLLTNMF MAAIIGSATA QIAVMARAMT
PEMEKEGYDT GFAAATTAAG GLLAPVIPPS MMFVIFGVLA QVPIGEMFLA GLIPGMMLAG
AFALVIFGIG VATGFPKGSW FTAPEAFSAL LYCLPAALIP CAIIGGVVFG IATPTESAAI
ASLLAFGMGW LVYGELKPAA LFAMFRRTAI NASMIIFMIA CANVFGWVII YEALPQKLAA
LITSITSDPF LFLLIVNLIL LLIGMLVDGI AAVILISPIL LPIAVNHYDI SAHQFGVVMC
LNLVLGLLTP PVGVGLYIAS SMSGATPGQI LRSLWPFLLA VALILVLLSR FPVLSTAFL
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