| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1569 |
|---|
| Symbol | upp |
|---|
| ID | 4078378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1676842 |
|---|
| End bp | 1677474 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006882 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_613564 |
|---|
| Protein GI | 99081410 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACC ACCTGACCGT CGTTGACCAC CCGCTCGTAC AACACAAGCT GACCATCATG
CGGGACAAGG CCACGTCCAC CTATGAATTT CGCCAGCTGT TGCGCGAGCT GACGCAGCTG
TTGGCCTATG AGGTCACCCG CGAGTTGCCG CTCACGACGA CCACCATCGA AACCCCTATG
GAGGAAATGG AAGCGCCGAT CCTCGCGGGC AAGAAGCTGG CACTTGTGTC GATCCTGCGC
GCAGGCAACG GCATGCTCGA TGGGGTGCTC GAGCTGGTGC CCTCGGCGCG GGTGGGCTTT
GTCGGCATGT ACCGCGACGA GGAAACGCTG GAGCCGGTGC AGTATTATTT CAAAGTTCCG
CAGCAGATCT CTGACCGGAT GGTGATTGCG GTGGACCCGA TGCTGGCGAC GGGAAATTCC
TCGGTCGCTG CGGTTGACCT GCTGAAAAAA GCAGGCGCCA ACAACATTCG GTTCTTGTGC
CTGCTGGCCT CGCCCGAAGG GGTGGCACGC ATGAAAGAAG CGCATCCGGA TGTGAAGATC
ATCACCGCCT CGCTGGATCG CGGCCTCAAT GAAAAGGGCT ACATCATGCC CGGGCTCGGG
GATGCGGGCG ACCGTATGTT CGGCACCAAA TAG
|
|---|
| Protein sequence | MSDHLTVVDH PLVQHKLTIM RDKATSTYEF RQLLRELTQL LAYEVTRELP LTTTTIETPM
EEMEAPILAG KKLALVSILR AGNGMLDGVL ELVPSARVGF VGMYRDEETL EPVQYYFKVP
QQISDRMVIA VDPMLATGNS SVAAVDLLKK AGANNIRFLC LLASPEGVAR MKEAHPDVKI
ITASLDRGLN EKGYIMPGLG DAGDRMFGTK
|
|---|
| |