| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1565 |
|---|
| Symbol | |
|---|
| ID | 4078374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1671523 |
|---|
| End bp | 1673154 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006878 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_613560 |
|---|
| Protein GI | 99081406 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTGGT TGGCCGATGA AACCGGGTTG GAGCGCAGGG CTGCAAATTA TGTCGCGCTG
ACGCCGCTGT CCCATTTGCA GCGGGCGGCG CATGTCTTTG CCGACGAACC CGCCTTGGTC
TACGGTCAGA CTCGGCGCAG CTATGCCCAG TATCATGATC GCTGCACGCG GTTGGCGTCG
GCATTGGCCG GGATGGGGGT TGCTCCGGGC GATGTGGTGG CAACATTGCT GCCCAACATC
CCCGCACAGG CGGAGGCACA TTTTGGCGTG CCAGCCTGCG GGGCGGTGCT CAATACGATC
AACATTCGGC TGGATGTGGA TACGGTGGCC TATATCTTTG ATCACGGTCA GGCCAAAGTC
GTGCTTGTGG ACAGTGAATT CTTGCCTCTT GCCGAAGCCG CCAAAGAAAG ACTGCAGGGC
GCAGGCCCTA CCCTCATTGA AGTGCCGGAC ACAGAGGCTG GCCATGCGGC CAGCGGTCGC
TACACCACCT ATGAAGACCT GATCGCGCAT GGTGCAACTG ATTTTGACTG GATCATGCCC
GAGGATGAAT GGGAGAGCCT CGCGCTCAAT TACACCTCTG GCACCACCGG GCGCCCGAAA
GGCGTGGTCT ACCATCACCG CGGCGCCTAC CTGATGACCA TGGGCACGGT GGTGTCGTGG
CGGTTGCAAC TGCGCCCGGT CTACCTGACC ATCGTGCCGC TGTTTCATTG CAACGGCTGG
AACCACACTT GGATGATGCC GGTCCTGGGC GGCACCGTGG TTTGCTGTCG CAACACCACC
GCCGAAGCCA TCTATAACGC CATCGCGGAT GAGGGTGTCA CCCATTTTGG CGGCGCGCCC
ATCGTGCTCA ACATGATCGT GAACGCCAAG GACACCGAGC GCCGCGCCTT TGACCACACG
GTCGAAGTCT TTACCGCCGG TGCGCCCCCT GCCCCGGCCA CGCTCGAGAA AATCGAACGC
CTGGGCTTTC ATGTCACGCA AGTCTACGGG CTTACAGAGA CCTATGGTCA TGTGACGGAA
TGCCTCTGGA AAGGCGACAG CTGGGACGAG CTGGATCAAC AAGGGCGCGC CGCAATCAAG
GCACGTCAGG GCGTGGCCTT TCCAATGATG GACCACATCA CGGTCATGGA CGCCGACATG
CAACAGGTCC CCATGAATGG CAGCGATCAG GGGGAAATCG TGATGCGGGG CAACTCCGTC
ATGAAAGGTT ACCTAAAGAA CCCGGAAGCC ACTGAAGAGG CGTTTGCGGG CGGCTATTTC
CACTCTGGCG ACATCGCGAT TCAGCACCCG GATGGCTACA TCCAGATCGC GGACCGCGCC
AAGGACATCA TTATCTCGGG CGGGGAGAAC ATCTCTTCCG TTGAAGTCGA GGGGGTCCTG
ATGGGCCATC CGGATGTGAA CCTTGCGGCG GTCGTGGCAA AACCGGACGA GAAATGGGGC
GAAGTGCCCT GCGCCTTTGT GGAACTCAAA GAAGGCGCAG ATGTCGATGA GGCATCCCTA
ATTGCCTTTG CCCGCCAAAC GCTTGCGGGC TTTAAGACAC CCAAGGCAGT GGTCTTCTGC
GAGCTCCCCA AGACCTCGAC CGGAAAGATC CAGAAGTTTG AACTGAGGAA GAGCTTCGCA
GGGGGGAGTT GA
|
|---|
| Protein sequence | MGWLADETGL ERRAANYVAL TPLSHLQRAA HVFADEPALV YGQTRRSYAQ YHDRCTRLAS
ALAGMGVAPG DVVATLLPNI PAQAEAHFGV PACGAVLNTI NIRLDVDTVA YIFDHGQAKV
VLVDSEFLPL AEAAKERLQG AGPTLIEVPD TEAGHAASGR YTTYEDLIAH GATDFDWIMP
EDEWESLALN YTSGTTGRPK GVVYHHRGAY LMTMGTVVSW RLQLRPVYLT IVPLFHCNGW
NHTWMMPVLG GTVVCCRNTT AEAIYNAIAD EGVTHFGGAP IVLNMIVNAK DTERRAFDHT
VEVFTAGAPP APATLEKIER LGFHVTQVYG LTETYGHVTE CLWKGDSWDE LDQQGRAAIK
ARQGVAFPMM DHITVMDADM QQVPMNGSDQ GEIVMRGNSV MKGYLKNPEA TEEAFAGGYF
HSGDIAIQHP DGYIQIADRA KDIIISGGEN ISSVEVEGVL MGHPDVNLAA VVAKPDEKWG
EVPCAFVELK EGADVDEASL IAFARQTLAG FKTPKAVVFC ELPKTSTGKI QKFELRKSFA
GGS
|
|---|
| |