| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1561 |
|---|
| Symbol | |
|---|
| ID | 4075859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1666096 |
|---|
| End bp | 1667307 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006874 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_613556 |
|---|
| Protein GI | 99081402 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.332281 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.704094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG CTTATATCTA TGATGCCGTT CGCACCCCGC GCGGCAAGGG CCGCAAGGAC
GGCGCCCTCC ACGAGGTGAC CTCTGTGCGC CTCTCTGCCC TGACCCTGAA CGCGCTGAAA
GAACGCAACA ACCTGGAAGG CCATGCGGTC GAGGATGTGA TCTGGGGCAA TGTCACGCAG
GTGATGGAAC AGGGTGGCTG TCTGGCGCGC TCTGCCGTGC TGGCCTCCGA TCTGGATCAA
TCCATCCCGG GTCTTGCGAT CAACCGCTTC TGCGCCTCTG GCATGGAAGC CGTGAACCTC
GCTGCAAACC AAGTCAAAGG TGGCGCAGGC GATGGCTATA TCGCGGGCGG CGTCGAGATG
ATGGGCCGTG TGGCAATGGG ATCGGACGGG GCGGCGATTG CCGTGGACCC GAGCCTTGCG
ATGGACACGT ATTTTGTGCC GCAGGGGATC TCGGCCGATA TCATCGCAAC CGAGTATGGG
TTTACCCGCG ATCAGGCCGA CGCACTGGCG GTGGAATCCC AGCGCCGTGC CAAGGCCGCG
TGGGATGACA ATCGCTTTGC CAAGTCGATC ATCACCGTAC GCGACCAGAA CGGTTTGGCG
ATCCTTGATC ATGACGAATA CATGCGCCCC GGCACCGATA TGCAGGCGCT TGGATCGCTC
AATGCATCGT TTCAGATGAT GGGCGAAGTA ATGCCTGGCT TTGATGCCGT GGCAAAACTG
AAGTACCCGC ATCTGGAAAA GGTCAACCAC ATCCACCACG CCGGGAACTC CTCAGGGATC
GTGGATGGCT CTGCCGCGCT GTTGATCGGC AACAAGGAAT TTGGCGAACG CCATGGTCTG
AAGCCGCGCG CCCGTATCAA GGCAACCGCC AAGATCGGCA CCGACCCGAC CATCATGCTG
ACCGGTCCTG TGCCTGTGAC CGAGAAGATC CTCAAAGACA CCGGCATGAC AATATCCGAT
CTGGATCTAT TTGAGGTCAA CGAGGCCTTT GCCTCCGTGG TGTTGCGCTT CCAGCAAGCC
TTTGACGTCG ATCCGGCCCT GGTAAACGTG AACGGCGGCT CCATCGCCAT GGGGCACCCT
TTGGGGGCAA CCGGTGCGAT CATCATCGGC ACGCTGCTGG ACGAGCTGGA GCGGCAGGAC
AAGGAATGCG GCCTTGCCAC GCTCTGCATT GCATCCGGCA TGGGTGCGGC CACCATCATC
GAGCGCGTCT AA
|
|---|
| Protein sequence | MTEAYIYDAV RTPRGKGRKD GALHEVTSVR LSALTLNALK ERNNLEGHAV EDVIWGNVTQ
VMEQGGCLAR SAVLASDLDQ SIPGLAINRF CASGMEAVNL AANQVKGGAG DGYIAGGVEM
MGRVAMGSDG AAIAVDPSLA MDTYFVPQGI SADIIATEYG FTRDQADALA VESQRRAKAA
WDDNRFAKSI ITVRDQNGLA ILDHDEYMRP GTDMQALGSL NASFQMMGEV MPGFDAVAKL
KYPHLEKVNH IHHAGNSSGI VDGSAALLIG NKEFGERHGL KPRARIKATA KIGTDPTIML
TGPVPVTEKI LKDTGMTISD LDLFEVNEAF ASVVLRFQQA FDVDPALVNV NGGSIAMGHP
LGATGAIIIG TLLDELERQD KECGLATLCI ASGMGAATII ERV
|
|---|
| |