Gene TM1040_1510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1510 
Symbol 
ID4077066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1615849 
End bp1617180 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content65% 
IMG OID638006823 
ProductXRE family transcriptional regulator 
Protein accessionYP_613505 
Protein GI99081351 
COG category[R] General function prediction only 
COG ID[COG3800] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.899196 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGGAG ACAGTCTGAC AGGCAGCCGC ATCCGCGAGA GGCGCATGAT GCTGGGGTTG 
CGCCAGGCCG ATCTGGCCCG TGATGCGGGC ATCTCGGCCT CTTACCTCAA TCTCATCGAG
CACAACCGCC GCAGAATCGG CGGCAAACTC CTTGTGACCT TGGCGCAGGT GCTTGGCGTC
GAGCCTTCTC TTTTGACCGA AGGGGTCGAG GCGACGCTTG TGGCGTCCCT GCGCGAGGCT
GCGGCAGAAG CGCGCACGCC GATGGTCGAA CTCGATCGGG TGGACGAGTT TGCAGGCCGT
TTTCCCGGTT GGGCCGAGGT GCTGGCACAA ACCCATGGTC GCATCGGCGC GCTGGAGCGT
ACCGTTCGGT CGCTCTCGGA TCGCCTCACC CATGACCCGC ACCTTGCCGC CTCGCTCCAT
GAGGTGCTTT CAACAGCCGC TGCGATCCGG TCCACGGCGG GCATTCTCGC AGAGCCCGGA
GAGCTCGAAG CAGAATGGCG TGACCGGTTT CACAAGAACC TCGATCAGGA TGCGCAGCGT
TTGGCGGACA GCAGCCGCGC GCTGGTCCGG TTTCTGGATG AAAGCGATCA GGACGGCGAG
CGGCGCGGCA TCCCGCAAGA GGAAGTGGAG GCGTTTCTCG TCGCTCGCGA GTTCCATTTC
CCCGAACTAG AAGAGGGCAC CGCAAGCCCG CGCGAGCTTG TGCAATCGGT GAGCGAGCTT
GAAAGCACCG CTGCCCGCAA GCTTGCCGAG GCGGCCTTGG AGGTCTACCG CGAGGACGCC
GAACGCATGC CGATGGCCGC GCTGACGGCC GCCATTGCGC GACACGGTCT GGTGCCGGGC
AAACTGGCAC AGGCGTTGGA TGTGGAAATC TATCGCCTCT TGCGCCGCCT TGCGATGATG
CCAGAGGATG TTCTGGGGGT GTCAGTCGGG CTGGTGATCT GCGACGCCTC CGGTTCGATC
TTGCTGCGCA AGCCCGTCGC GGGGTTTCCT CTGCCGCGCT TTGGCGCTTC CTGTCCGCTC
TGGCCGCTGT TCACCGCGCT TTCGCAACCG GGGGTGCCGA TCCAGCGAAA CGTGCATCAA
GAGGGGCGCG CGGCGCGCGA CAGCACCTGT TTCGCGATTT CCTGGCAGGC CGAGCCTTCG
GACTTTGACC GCGACCCCGT CCTGCGCTCG GTGATGCTGA TCCTGCCGTC TGAGCAGCCA
GACCAGCCCC CCGCATCAGG CTCGCGCCCG GTAGGGGCGA GCTGCAGGAT CTGCGCGCGG
CGCGGATGCG CAGCAAGGCG CGAGCCGTCG ATTTTACGCG ATGCGAGAGG CGCCAGGTTA
ACGCAACTCT AA
 
Protein sequence
MPGDSLTGSR IRERRMMLGL RQADLARDAG ISASYLNLIE HNRRRIGGKL LVTLAQVLGV 
EPSLLTEGVE ATLVASLREA AAEARTPMVE LDRVDEFAGR FPGWAEVLAQ THGRIGALER
TVRSLSDRLT HDPHLAASLH EVLSTAAAIR STAGILAEPG ELEAEWRDRF HKNLDQDAQR
LADSSRALVR FLDESDQDGE RRGIPQEEVE AFLVAREFHF PELEEGTASP RELVQSVSEL
ESTAARKLAE AALEVYREDA ERMPMAALTA AIARHGLVPG KLAQALDVEI YRLLRRLAMM
PEDVLGVSVG LVICDASGSI LLRKPVAGFP LPRFGASCPL WPLFTALSQP GVPIQRNVHQ
EGRAARDSTC FAISWQAEPS DFDRDPVLRS VMLILPSEQP DQPPASGSRP VGASCRICAR
RGCAARREPS ILRDARGARL TQL